HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:30.2 nTPM
HPA Brain:63.9 nTPM
GTEx:30.2 nTPM
FANTOM5:38.6 Scaled Tags Per Million
Pig:75.0 nTPM
Mouse:61.2 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA020648
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 63.9
Sample id Sample description nTPM
Hippocampus
nTPM: 56.3
1898 Male, age 80, left hemisphere 66.8
1911 Female, age 85, right hemisphere 59.4
1855 Male, age 76, left hemisphere 55.2
2529 Female, age 94, left hemisphere 54.2
2621 Female, age 67, right hemisphere 54.1
2148 Female, age 91, left hemisphere 47.9
Dentate gyrus
nTPM: 51.3
2530 Female, age 94, left hemisphere 57.2
2246 Female, age 85, both hemispheres 55.0
2010 Male, age 76, both hemispheres 54.3
1927 Female, age 91, both hemispheres 51.2
2528 Male, age 74, both hemispheres 47.2
2531 Female, age 67, both hemispheres 42.9
Entorhinal gyrus
nTPM: 59.1
2117 Female, age 91, right hemisphere 65.9
2764 Male, age 80, right hemisphere 65.0
1938 Female, age 85, left hemisphere 58.6
2686 Male, age 75, right hemisphere 57.6
2613 Female, age 94, left hemisphere 54.7
1787 Male, age 76, left hemisphere 52.4
Hippocampus, CA1
nTPM: 63.9
2749 Male, age 80, left hemisphere 107.9
2527 Male, age 74, both hemispheres 60.4
1873 Female, age 85, both hemispheres 60.1
2082 Female, age 91, right hemisphere 51.9
2045 Male, age 76, both hemispheres 39.3
Hippocampus, CA2
nTPM: 54.7
1963 Male, age 80, left hemisphere 70.4
2249 Male, age 74, both hemispheres 58.0
1892 Male, age 76, both hemispheres 54.1
2113 Female, age 91, right hemisphere 50.4
1940 Female, age 85, left hemisphere 48.7
2437 Female, age 94, left hemisphere 46.6
Hippocampus, CA3
nTPM: 59.6
2137 Male, age 80, left hemisphere 108.3
2436 Male, age 74, both hemispheres 57.5
1891 Female, age 85, both hemispheres 56.5
1867 Male, age 76, both hemispheres 52.2
2620 Female, age 94, left hemisphere 42.0
2861 Female, age 67, both hemispheres 41.3
Parahippocampal cortex
nTPM: 54.2
1850 Male, age 80, both hemispheres 66.6
2532 Female, age 72, left hemisphere 58.7
1933 Female, age 85, both hemispheres 55.0
2245 Female, age 91, both hemispheres 54.3
2692 Male, age 74, both hemispheres 54.3
1990 Female, age 91, right hemisphere 53.8
2622 Female, age 67, right hemisphere 51.9
2018 Male, age 76, both hemispheres 50.8
2250 Female, age 67, right hemisphere 50.5
2693 Female, age 94, both hemispheres 45.9
Perirhinal gyrus
nTPM: 54.1
1794 Male, age 80, right hemisphere 61.9
1841 Female, age 85, right hemisphere 57.2
1847 Female, age 91, left hemisphere 54.7
2848 Male, age 76, right hemisphere 52.0
2521 Female, age 94, right hemisphere 44.7
Subiculum
nTPM: 63.2
1901 Male, age 80, both hemispheres 81.5
2042 Male, age 76, both hemispheres 66.8
2438 Female, age 94, left hemisphere 66.5
1977 Female, age 85, both hemispheres 64.7
2619 Male, age 74, both hemispheres 52.5
2729 Female, age 91, right hemisphere 47.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.2
Samples: 197

Max nTPM: 50.3
Min nTPM: 10.9
Std nTPM: 6.2
Median nTPM: 29.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 50.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 49.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 49.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 49.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 48.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 48.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 46.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 42.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 41.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 41.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 41.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.6
FF:10153-102I9 76 years, female 43.9
FF:10169-103B7 60 years, female 33.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 75.0
Pig sample Sample description nTPM
Subiculum
nTPM: 58.8
Samples: 4

Max nTPM: 72.8
Min nTPM: 51.6
Sample A Female 72.8
Sample B Female 53.2
Sample C Male 57.7
Sample D Male 51.6
Dorsal hippocampus
nTPM: 75.0
Samples: 4

Max nTPM: 100.9
Min nTPM: 54.1
Sample A Female 100.9
Sample B Female 75.3
Sample C Male 69.6
Sample D Male 54.1
Entorhinal cortex
nTPM: 69.5
Samples: 4

Max nTPM: 77.0
Min nTPM: 63.0
Sample A Female 77.0
Sample B Female 64.5
Sample C Male 73.4
Sample D Male 63.0
Ventral hippocampus
nTPM: 64.7
Samples: 4

Max nTPM: 75.2
Min nTPM: 50.1
Sample A Female 64.2
Sample B Female 50.1
Sample C Male 69.4
Sample D Male 75.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 61.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.9
Samples: 4

Max nTPM: 56.8
Min nTPM: 48.0
Sample A Male 48.0
Sample B Male 48.6
Sample C Female 50.3
Sample D Female 56.8
Hippocampal formation
nTPM: 61.2
Samples: 4

Max nTPM: 68.4
Min nTPM: 56.9
Sample A Male 57.8
Sample B Male 61.7
Sample C Female 68.4
Sample D Female 56.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
68798729 Antisense, RP_050217_01_B06, Mouse strain C57BL/6J (56 days, male) 3.8

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