BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:7.3 nTPM
HPA Brain:0.9 nTPM
GTEx:7.3 nTPM

CAUDATE - Antibody stainingi
Antibody HPA042759Antibody HPA042813
Glial cells Not detectedMedium
Neuronal cells Not detectedHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.8
2290 Female, age 72, unknown 1.2
1854 Male, age 80, left hemisphere 1.0
2481 Female, age 94, left hemisphere 0.9
1781 Male, age 74, unknown 0.8
2288 Male, age 75, left hemisphere 0.7
2846 Female, age 79, unknown 0.6
1857 Female, age 85, left hemisphere 0.5
2289 Male, age 61, right hemisphere 0.4
Globus pallidus, externus
nTPM: 0.3
2395 Male, age 75, both hemispheres 0.6
2772 Female, age 79, unknown 0.5
2567 Female, age 72, unknown 0.3
2646 Male, age 61, right hemisphere 0.2
1996 Male, age 80, right hemisphere 0.1
Globus pallidus, internus
nTPM: 0.5
2287 Male, age 75, right hemisphere 0.9
1818 Male, age 74, unknown 0.6
2483 Female, age 94, right hemisphere 0.6
2111 Female, age 85, right hemisphere 0.5
2566 Female, age 72, unknown 0.5
2778 Female, age 91, both hemispheres 0.2
2037 Male, age 80, right hemisphere 0.1
Nucleus accumbens
nTPM: 0.7
2824 Male, age 61, right hemisphere 1.3
1806 Female, age 85, left hemisphere 1.1
2698 Female, age 72, unknown 0.9
2286 Male, age 75, left hemisphere 0.8
2732 Male, age 80, right hemisphere 0.7
1783 Male, age 74, unknown 0.4
1856 Female, age 91, right hemisphere 0.4
2391 Female, age 94, left hemisphere 0.3
Nucleus basalis of Meynert
nTPM: 0.5
2484 Female, age 94, left hemisphere 0.8
2393 Male, age 80, right hemisphere 0.5
2821 Male, age 75, both hemispheres 0.5
2569 Male, age 61, both hemispheres 0.1
Nucleus of the diagonal band
nTPM: 0.7
2775 Male, age 80, right hemisphere 1.0
2195 Female, age 85, both hemispheres 0.8
1812 Female, age 91, both hemispheres 0.6
1979 Male, age 74, unknown 0.4
2029 Male, age 61, right hemisphere 0.4
Putamen
nTPM: 0.9
1838 Male, age 80, right hemisphere 1.4
1937 Female, age 91, right hemisphere 1.3
1829 Male, age 74, unknown 0.8
2647 Male, age 75, left hemisphere 0.8
2482 Female, age 94, left hemisphere 0.7
2466 Female, age 79, unknown 0.5
2489 Female, age 72, unknown 0.5
Septal nuclei
nTPM: 0.6
2199 Male, age 80, right hemisphere 1.5
2031 Female, age 72, unknown 0.9
2009 Female, age 91, both hemispheres 0.8
2059 Female, age 85, both hemispheres 0.6
1960 Male, age 74, unknown 0.4
2629 Female, age 94, right hemisphere 0.4
2394 Male, age 61, left hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 0.5
2201 Male, age 74, unknown 0.6
1974 Female, age 91, both hemispheres 0.5
2486 Female, age 94, both hemispheres 0.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.0
Samples: 246

Max nTPM: 19.1
Min nTPM: 0.0
Std nTPM: 3.7
Median nTPM: 5.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 19.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 17.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 16.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 15.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 15.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 15.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 14.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 14.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 14.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 13.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 13.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.3
Samples: 246

Max nTPM: 19.6
Min nTPM: 0.2
Std nTPM: 3.8
Median nTPM: 7.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 19.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 18.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 17.3
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 17.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 16.2
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 16.1
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 15.0
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 14.4
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 14.2
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 13.7
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 13.5
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Brain - Putamen (basal ganglia)
Average nTPM: 5.7
Samples: 205

Max nTPM: 14.9
Min nTPM: 0.0
Std nTPM: 3.2
Median nTPM: 5.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 14.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 14.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 14.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 13.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 13.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 12.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 12.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 12.3
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 12.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 12.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 12.0
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