MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.6 nTPM
HPA Brain:26.8 nTPM
GTEx:6.6 nTPM
FANTOM5:21.8 Scaled Tags Per Million
Pig:22.5 nTPM
Mouse:17.4 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.7
2219 Male, age 76, both hemispheres 27.9
2586 Male, age 75, left hemisphere 25.1
2828 Female, age 72, unknown 24.8
1870 Female, age 42, unknown 24.6
1830 Male, age 51, unknown 24.4
1827 Male, age 72, unknown 24.3
2666 Male, age 74, left hemisphere 23.7
1833 Male, age 53, unknown 23.6
2411 Female, age 72, unknown 20.9
2019 Male, age 18, unknown 18.2
Dorsal raphe nucleus
nTPM: 23.3
2047 Male, age 72, unknown 24.2
2750 Male, age 76, both hemispheres 23.8
1828 Male, age 53, unknown 23.3
2298 Female, age 72, unknown 22.6
2016 Female, age 72, unknown 22.5
Inferior colliculus
nTPM: 23.1
2849 Male, age 72, unknown 28.4
1848 Female, age 42, unknown 24.4
1890 Male, age 53, unknown 20.2
2097 Female, age 72, unknown 19.4
Median raphe nucleus
nTPM: 24.9
2220 Male, age 76, midline 24.9
Periaquaductal grey, anterior
nTPM: 26.8
1947 Male, age 18, unknown 29.9
1795 Male, age 51, unknown 27.4
2502 Female, age 75, unknown 23.0
Periaquaductal grey, dorsal
nTPM: 24.1
2850 Male, age 76, both hemispheres 25.2
1840 Male, age 53, unknown 25.1
2464 Female, age 72, unknown 24.3
1831 Male, age 72, unknown 21.9
Periaquaductal grey, lateral
nTPM: 23.0
2140 Male, age 76, both hemispheres 24.8
2053 Male, age 18, unknown 23.9
2272 Male, age 74, both hemispheres 20.4
Pretectal area
nTPM: 23.1
2825 Male, age 18, unknown 26.4
2224 Female, age 72, unknown 25.6
1815 Male, age 53, unknown 24.6
2316 Male, age 76, right hemisphere 23.5
2667 Female, age 75, unknown 23.3
1816 Male, age 51, unknown 22.7
2007 Male, age 72, unknown 22.7
1817 Female, age 42, unknown 22.4
2407 Male, age 75, both hemispheres 21.9
1944 Female, age 72, unknown 20.7
2273 Male, age 74, both hemispheres 20.3
Red nucleus
nTPM: 23.0
2588 Male, age 74, left hemisphere 26.1
2584 Male, age 75, left hemisphere 24.5
1904 Male, age 53, unknown 24.2
2725 Female, age 75, unknown 23.7
2503 Female, age 72, unknown 23.1
2823 Male, age 76, right hemisphere 22.9
1954 Female, age 42, unknown 22.6
2769 Male, age 72, unknown 22.5
1821 Female, age 72, unknown 22.3
1865 Male, age 51, unknown 22.0
2227 Male, age 72, unknown 21.8
2785 Male, age 18, unknown 19.8
Substantia nigra
nTPM: 22.3
2699 Male, age 18, unknown 24.4
1851 Male, age 51, unknown 23.2
2590 Female, age 75, unknown 23.0
1916 Female, age 42, unknown 22.7
2583 Male, age 75, right hemisphere 22.4
2665 Male, age 74, both hemispheres 22.3
1889 Female, age 72, unknown 21.9
1941 Male, age 53, unknown 21.5
2409 Female, age 72, unknown 21.1
2241 Male, age 72, unknown 20.1
Superior colliculus
nTPM: 23.3
2668 Female, age 75, unknown 24.8
2664 Male, age 75, both hemispheres 24.7
1839 Male, age 51, unknown 24.0
1796 Male, age 53, unknown 23.8
2261 Male, age 18, unknown 23.6
1995 Male, age 72, unknown 23.1
1895 Male, age 76, right hemisphere 22.6
2587 Male, age 74, left hemisphere 22.6
1913 Female, age 42, unknown 22.5
2087 Female, age 72, unknown 20.8
Ventral tegmental area
nTPM: 23.2
2410 Female, age 72, unknown 26.5
2218 Male, age 76, both hemispheres 24.5
2021 Male, age 53, unknown 22.5
2223 Female, age 72, unknown 22.5
1915 Female, age 42, unknown 22.1
1942 Male, age 51, unknown 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.6
Samples: 139

Max nTPM: 8.7
Min nTPM: 4.8
Std nTPM: 0.8
Median nTPM: 6.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 8.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 8.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 8.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 8.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 8.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 8.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 8.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 7.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 7.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 7.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.8
FF:10158-103A5 76 years, female 21.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.5
Samples: 4

Max nTPM: 25.8
Min nTPM: 19.0
Sample A Female 21.8
Sample B Female 19.0
Sample C Male 25.8
Sample D Male 23.5
Midbrain
nTPM: 21.8
Samples: 4

Max nTPM: 24.9
Min nTPM: 19.2
Sample A Female 24.9
Sample B Female 21.3
Sample C Male 21.8
Sample D Male 19.2
Periaqueductal gray
nTPM: 22.0
Samples: 3

Max nTPM: 23.6
Min nTPM: 20.7
Sample B Female 20.7
Sample C Male 23.6
Sample D Male 21.8
Superior colliculi
nTPM: 20.2
Samples: 4

Max nTPM: 23.3
Min nTPM: 16.3
Sample A Female 20.5
Sample B Female 16.3
Sample C Male 20.8
Sample D Male 23.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 18.9
Min nTPM: 15.3
Sample A Male 17.9
Sample B Male 18.9
Sample C Female 15.3
Sample D Female 17.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
68844253 Antisense, RP_050222_01_C02, Mouse strain C57BL/6J (56 days, male) 5.5

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