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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:51.3 nTPM
HPA:19.9 nTPM
GTEx:51.3 nTPM
FANTOM5:50.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008965Antibody CAB009445
Glandular cells MediumMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPM 19.9
overview
Male, age 65
Small intestine sample 232
nTPM: 17.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 23.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 20.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 18.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 51.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 51.3
Samples: 187

Max nTPM: 214.3
Min nTPM: 8.4
Std nTPM: 28.2
Median nTPM: 47.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 214.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 124.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 123.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 120.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 118.1
GTEX-1192X-2526-SM-59868 50-59 years, male 109.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 107.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 104.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 101.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 99.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 93.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 90.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 90.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 89.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 87.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 86.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 86.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 86.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 85.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 85.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 83.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 83.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 83.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 82.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 82.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 82.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 81.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 79.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 79.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 79.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 78.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 78.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 77.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 77.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 77.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 77.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 77.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 77.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 75.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 74.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 73.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 72.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 71.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 70.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 70.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 69.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 69.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 69.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 68.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 67.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 66.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 65.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 65.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 65.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 65.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 65.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 65.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 64.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 64.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 62.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 62.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 60.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 60.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 59.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 59.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 58.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 58.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 57.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 57.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 55.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 54.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 54.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 54.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 54.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 53.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 52.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 52.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 52.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 51.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 51.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 50.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 50.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 50.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 50.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 49.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 49.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 49.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 49.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 48.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 48.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 48.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 48.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 48.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 47.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 47.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 46.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 46.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 45.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 44.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 44.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 42.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 42.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 42.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 42.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 41.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 41.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 41.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 40.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 40.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 39.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 39.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 39.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 39.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 39.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 38.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 38.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 38.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 37.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 37.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 37.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 36.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 36.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 36.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 35.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 35.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 35.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 34.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 34.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 34.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 34.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 34.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 32.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 32.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 32.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 32.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 31.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 30.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 30.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 30.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 30.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 28.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 28.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 28.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 28.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 27.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 26.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 25.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 25.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 25.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 24.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 24.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 24.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 24.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 23.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 23.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 23.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 23.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 23.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 22.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 22.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 22.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 22.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 22.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 22.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 21.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 21.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 21.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 20.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 20.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 19.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 19.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 18.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 18.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 18.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 17.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 17.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 16.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 16.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 16.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 16.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 16.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 15.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 15.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 15.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 13.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 13.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 8.4
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 50.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 50.0
FF:10024-101D6 15,40,85 years, mixed 50.0

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