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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
36.6
nTPM
Monaco:
57.5
nTPM
Schmiedel:
38.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
36.6
HPA sample
nTPM
gdT-cell nTPM: 36.2
Samples: 6
Max nTPM: 47.8
Min nTPM: 29.5
P10809_1007
32.1
P10809_1022
47.8
P10809_1041
39.7
P10809_1060
29.5
P10809_1077
31.4
P10809_1098
36.8
MAIT T-cell nTPM: 36.6
Samples: 6
Max nTPM: 45.1
Min nTPM: 32.0
P10809_1006
35.3
P10809_1024
36.9
P10809_1043
34.4
P10809_1062
32.0
P10809_1083
35.7
P10809_1097
45.1
Memory CD4 T-cell nTPM: 20.2
Samples: 6
Max nTPM: 28.8
Min nTPM: 13.0
P10809_1014
17.8
P10809_1026
13.0
P10809_1045
18.0
P10809_1064
27.4
P10809_1086
28.8
P10809_1113
16.2
Memory CD8 T-cell nTPM: 29.1
Samples: 5
Max nTPM: 33.9
Min nTPM: 19.1
P10809_1012
19.1
P10809_1027
33.9
P10809_1046
32.9
P10809_1065
27.3
P10809_1111
32.3
Naive CD4 T-cell nTPM: 12.9
Samples: 6
Max nTPM: 20.6
Min nTPM: 10.5
P10809_1015
10.7
P10809_1030
12.0
P10809_1049
12.3
P10809_1068
11.5
P10809_1085
20.6
P10809_1112
10.5
Naive CD8 T-cell nTPM: 16.5
Samples: 6
Max nTPM: 32.3
Min nTPM: 8.9
P10809_1016
8.9
P10809_1031
9.4
P10809_1050
18.1
P10809_1069
19.2
P10809_1087
32.3
P10809_1110
11.2
T-reg nTPM: 15.8
Samples: 6
Max nTPM: 20.6
Min nTPM: 12.2
P10809_1018
19.5
P10809_1037
14.7
P10809_1056
14.2
P10809_1075
13.8
P10809_1094
20.6
P10809_1106
12.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
57.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 14.0
Samples: 4
Max nTPM: 30.7
Min nTPM: 1.4
RHH5202_R3573
1.4
RHH5230_R3602
30.7
RHH5259_R3631
14.2
RHH5288_R3660
9.5
Effector memory CD8 T-cell nTPM: 52.7
Samples: 4
Max nTPM: 84.3
Min nTPM: 20.8
RHH5203_R3574
55.7
RHH5231_R3603
84.3
RHH5260_R3632
49.8
RHH5289_R3661
20.8
MAIT T-cell nTPM: 41.2
Samples: 4
Max nTPM: 57.2
Min nTPM: 16.0
RHH5233_R3605
16.0
RHH5205_R3576
57.2
RHH5262_R3634
45.6
RHH5297_R3663
45.8
Memory CD4 T-cell TFH nTPM: 13.0
Samples: 4
Max nTPM: 22.7
Min nTPM: 2.5
RHH5300_R3666
11.3
RHH5236_R3608
22.7
RHH5265_R3637
15.4
RHH5208_R3579
2.5
Memory CD4 T-cell Th1 nTPM: 23.0
Samples: 4
Max nTPM: 27.4
Min nTPM: 14.4
RHH5210_R3581
25.3
RHH5302_R3668
14.4
RHH5238_R3610
27.4
RHH5267_R3639
25.0
Memory CD4 T-cell Th1/Th17 nTPM: 31.5
Samples: 4
Max nTPM: 54.8
Min nTPM: 3.6
RHH5303_R3669
3.6
RHH5211_R3582
54.8
RHH5239_R3611
31.3
RHH5268_R3640
36.4
Memory CD4 T-cell Th17 nTPM: 11.2
Samples: 4
Max nTPM: 19.7
Min nTPM: 0.8
RHH5304_R3670
13.6
RHH5212_R3583
19.7
RHH5240_R3612
0.8
RHH5269_R3641
10.6
Memory CD4 T-cell Th2 nTPM: 8.8
Samples: 4
Max nTPM: 15.9
Min nTPM: 0.9
RHH5305_R3671
8.9
RHH5213_R3584
15.9
RHH5241_R3613
0.9
RHH5270_R3642
9.5
Naive CD4 T-cell nTPM: 7.1
Samples: 4
Max nTPM: 8.2
Min nTPM: 4.4
RHH5306_R3672
8.2
RHH5214_R3585
7.7
RHH5242_R3614
8.0
RHH5271_R3643
4.4
Naive CD8 T-cell nTPM: 5.4
Samples: 4
Max nTPM: 9.8
Min nTPM: 0.0
RHH5201_R3572
0.0
RHH5229_R3601
9.8
RHH5258_R3630
5.8
RHH5287_R3659
6.1
Non-Vd2 gdTCR nTPM: 32.0
Samples: 4
Max nTPM: 67.1
Min nTPM: 7.8
RHH5235_R3607
67.1
RHH5264_R3636
7.8
RHH5207_R3578
13.9
RHH5299_R3665
39.0
T-reg nTPM: 15.2
Samples: 4
Max nTPM: 18.4
Min nTPM: 12.1
RHH5301_R3667
12.1
RHH5237_R3609
16.1
RHH5266_R3638
14.0
RHH5209_R3580
18.4
Terminal effector memory CD4 T-cell nTPM: 53.7
Samples: 2
Max nTPM: 77.1
Min nTPM: 30.2
RHH5243_R3615
77.1
RHH5272_R3644
30.2
Terminal effector memory CD8 T-cell nTPM: 48.0
Samples: 4
Max nTPM: 80.1
Min nTPM: 19.4
RHH5232_R3604
33.0
RHH5204_R3575
59.3
RHH5261_R3633
80.1
RHH5296_R3662
19.4
Vd2 gdTCR nTPM: 57.5
Samples: 4
Max nTPM: 81.1
Min nTPM: 43.3
RHH5234_R3606
43.3
RHH5206_R3577
81.1
RHH5263_R3635
53.1
RHH5298_R3664
52.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
