HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:56.4 nTPM
HPA Brain:72.2 nTPM
GTEx:56.4 nTPM
FANTOM5:23.2 Scaled Tags Per Million
Pig:59.0 nTPM
Mouse:55.2 nTPM
Allen mouse:13.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006738Antibody CAB004216
Glial cells HighHigh
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 72.2
Sample id Sample description nTPM
Hippocampus
nTPM: 69.4
2148 Female, age 91, left hemisphere 94.3
2621 Female, age 67, right hemisphere 73.8
1911 Female, age 85, right hemisphere 67.0
2529 Female, age 94, left hemisphere 64.0
1898 Male, age 80, left hemisphere 62.7
1855 Male, age 76, left hemisphere 54.4
Dentate gyrus
nTPM: 69.1
2531 Female, age 67, both hemispheres 93.6
1927 Female, age 91, both hemispheres 76.2
2528 Male, age 74, both hemispheres 65.1
2530 Female, age 94, left hemisphere 65.1
2246 Female, age 85, both hemispheres 58.4
2010 Male, age 76, both hemispheres 56.2
Entorhinal gyrus
nTPM: 62.9
2613 Female, age 94, left hemisphere 75.1
2764 Male, age 80, right hemisphere 73.8
1787 Male, age 76, left hemisphere 59.1
2117 Female, age 91, right hemisphere 58.5
2686 Male, age 75, right hemisphere 57.5
1938 Female, age 85, left hemisphere 53.5
Hippocampus, CA1
nTPM: 61.1
2045 Male, age 76, both hemispheres 67.2
1873 Female, age 85, both hemispheres 65.3
2527 Male, age 74, both hemispheres 61.0
2749 Male, age 80, left hemisphere 56.7
2082 Female, age 91, right hemisphere 55.2
Hippocampus, CA2
nTPM: 62.2
2249 Male, age 74, both hemispheres 71.7
1940 Female, age 85, left hemisphere 69.9
1963 Male, age 80, left hemisphere 61.8
1892 Male, age 76, both hemispheres 57.3
2437 Female, age 94, left hemisphere 57.3
2113 Female, age 91, right hemisphere 55.0
Hippocampus, CA3
nTPM: 72.2
2620 Female, age 94, left hemisphere 110.3
2861 Female, age 67, both hemispheres 88.4
1867 Male, age 76, both hemispheres 66.4
1891 Female, age 85, both hemispheres 62.7
2137 Male, age 80, left hemisphere 56.3
2436 Male, age 74, both hemispheres 48.8
Parahippocampal cortex
nTPM: 55.3
2622 Female, age 67, right hemisphere 69.6
1990 Female, age 91, right hemisphere 60.6
2245 Female, age 91, both hemispheres 58.8
1933 Female, age 85, both hemispheres 55.8
2532 Female, age 72, left hemisphere 54.3
2250 Female, age 67, right hemisphere 53.0
2693 Female, age 94, both hemispheres 51.6
2692 Male, age 74, both hemispheres 50.4
2018 Male, age 76, both hemispheres 49.8
1850 Male, age 80, both hemispheres 49.3
Perirhinal gyrus
nTPM: 52.3
1794 Male, age 80, right hemisphere 55.6
2848 Male, age 76, right hemisphere 52.9
2521 Female, age 94, right hemisphere 52.8
1847 Female, age 91, left hemisphere 52.4
1841 Female, age 85, right hemisphere 47.8
Subiculum
nTPM: 61.1
2729 Female, age 91, right hemisphere 81.6
1901 Male, age 80, both hemispheres 60.8
2619 Male, age 74, both hemispheres 59.3
1977 Female, age 85, both hemispheres 57.8
2042 Male, age 76, both hemispheres 56.4
2438 Female, age 94, left hemisphere 50.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 56.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 56.4
Samples: 197

Max nTPM: 151.8
Min nTPM: 19.4
Std nTPM: 19.1
Median nTPM: 52.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 151.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 144.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 126.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 117.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 114.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 101.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 98.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 92.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 90.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 89.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 87.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.2
FF:10153-102I9 76 years, female 26.8
FF:10169-103B7 60 years, female 19.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 59.0
Pig sample Sample description nTPM
Subiculum
nTPM: 57.7
Samples: 4

Max nTPM: 70.5
Min nTPM: 47.7
Sample A Female 70.5
Sample B Female 55.1
Sample C Male 57.6
Sample D Male 47.7
Dorsal hippocampus
nTPM: 58.4
Samples: 4

Max nTPM: 67.2
Min nTPM: 52.3
Sample A Female 67.2
Sample B Female 60.1
Sample C Male 53.8
Sample D Male 52.3
Entorhinal cortex
nTPM: 57.5
Samples: 4

Max nTPM: 63.2
Min nTPM: 53.4
Sample A Female 56.5
Sample B Female 56.9
Sample C Male 63.2
Sample D Male 53.4
Ventral hippocampus
nTPM: 59.0
Samples: 4

Max nTPM: 70.8
Min nTPM: 47.2
Sample A Female 55.5
Sample B Female 47.2
Sample C Male 70.8
Sample D Male 62.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 55.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 54.8
Samples: 4

Max nTPM: 56.9
Min nTPM: 52.4
Sample A Male 56.9
Sample B Male 55.8
Sample C Female 52.4
Sample D Female 54.1
Hippocampal formation
nTPM: 55.3
Samples: 4

Max nTPM: 57.5
Min nTPM: 52.0
Sample A Male 55.3
Sample B Male 56.2
Sample C Female 57.5
Sample D Female 52.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.6
293258 Antisense, RP_040617_01_A05, Mouse strain C57BL/6J (56 days, male) 15.7
81599610 Antisense, RP_071126_01_B08, Mouse strain C57BL/6J (56 days, male) 11.4

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