MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.4 nTPM
HPA Brain:60.4 nTPM
GTEx:37.4 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:58.5 nTPM
Mouse:43.2 nTPM
Allen mouse:7.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.6
2586 Male, age 75, left hemisphere 73.6
2828 Female, age 72, unknown 56.5
2219 Male, age 76, both hemispheres 52.9
2666 Male, age 74, left hemisphere 51.0
1870 Female, age 42, unknown 50.1
2019 Male, age 18, unknown 48.9
2411 Female, age 72, unknown 46.7
1830 Male, age 51, unknown 46.6
1833 Male, age 53, unknown 45.5
1827 Male, age 72, unknown 43.9
Dorsal raphe nucleus
nTPM: 53.6
2016 Female, age 72, unknown 63.8
2047 Male, age 72, unknown 53.1
2298 Female, age 72, unknown 51.4
1828 Male, age 53, unknown 50.5
2750 Male, age 76, both hemispheres 49.2
Inferior colliculus
nTPM: 45.6
2849 Male, age 72, unknown 50.4
1890 Male, age 53, unknown 48.3
2097 Female, age 72, unknown 43.2
1848 Female, age 42, unknown 40.7
Median raphe nucleus
nTPM: 41.3
2220 Male, age 76, midline 41.3
Periaquaductal grey, anterior
nTPM: 60.4
1947 Male, age 18, unknown 61.7
2502 Female, age 75, unknown 59.8
1795 Male, age 51, unknown 59.7
Periaquaductal grey, dorsal
nTPM: 50.6
2850 Male, age 76, both hemispheres 56.9
1840 Male, age 53, unknown 51.9
2464 Female, age 72, unknown 49.6
1831 Male, age 72, unknown 44.0
Periaquaductal grey, lateral
nTPM: 58.4
2272 Male, age 74, both hemispheres 65.3
2140 Male, age 76, both hemispheres 65.0
2053 Male, age 18, unknown 44.9
Pretectal area
nTPM: 51.7
2273 Male, age 74, both hemispheres 68.6
2007 Male, age 72, unknown 55.6
2224 Female, age 72, unknown 54.4
2316 Male, age 76, right hemisphere 53.5
2407 Male, age 75, both hemispheres 50.2
1815 Male, age 53, unknown 49.4
1944 Female, age 72, unknown 49.3
2825 Male, age 18, unknown 48.8
2667 Female, age 75, unknown 48.3
1816 Male, age 51, unknown 46.2
1817 Female, age 42, unknown 43.9
Red nucleus
nTPM: 47.1
2769 Male, age 72, unknown 56.8
2785 Male, age 18, unknown 55.3
2227 Male, age 72, unknown 53.6
2584 Male, age 75, left hemisphere 51.2
2588 Male, age 74, left hemisphere 51.2
2503 Female, age 72, unknown 47.1
2725 Female, age 75, unknown 46.3
1904 Male, age 53, unknown 45.1
1865 Male, age 51, unknown 41.9
1954 Female, age 42, unknown 41.2
2823 Male, age 76, right hemisphere 37.9
1821 Female, age 72, unknown 36.8
Substantia nigra
nTPM: 48.9
1916 Female, age 42, unknown 57.3
1851 Male, age 51, unknown 53.9
1941 Male, age 53, unknown 53.3
2699 Male, age 18, unknown 52.9
2665 Male, age 74, both hemispheres 50.7
2583 Male, age 75, right hemisphere 50.1
2590 Female, age 75, unknown 49.0
1889 Female, age 72, unknown 45.9
2241 Male, age 72, unknown 39.6
2409 Female, age 72, unknown 36.3
Superior colliculus
nTPM: 48.9
2664 Male, age 75, both hemispheres 56.9
2668 Female, age 75, unknown 52.0
2261 Male, age 18, unknown 51.8
1839 Male, age 51, unknown 50.1
1913 Female, age 42, unknown 48.9
1796 Male, age 53, unknown 48.2
2587 Male, age 74, left hemisphere 47.7
1995 Male, age 72, unknown 47.3
1895 Male, age 76, right hemisphere 46.9
2087 Female, age 72, unknown 38.9
Ventral tegmental area
nTPM: 50.5
1942 Male, age 51, unknown 60.0
1915 Female, age 42, unknown 54.0
2021 Male, age 53, unknown 53.5
2218 Male, age 76, both hemispheres 49.1
2223 Female, age 72, unknown 43.9
2410 Female, age 72, unknown 42.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.4
Samples: 139

Max nTPM: 63.9
Min nTPM: 21.1
Std nTPM: 6.8
Median nTPM: 36.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 63.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 53.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 53.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 52.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 52.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 51.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 50.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 50.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 50.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 49.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 48.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.9
FF:10158-103A5 76 years, female 31.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.9
Samples: 4

Max nTPM: 65.7
Min nTPM: 38.0
Sample A Female 65.7
Sample B Female 47.9
Sample C Male 64.1
Sample D Male 38.0
Midbrain
nTPM: 53.9
Samples: 4

Max nTPM: 65.6
Min nTPM: 40.9
Sample A Female 40.9
Sample B Female 49.1
Sample C Male 65.6
Sample D Male 60.0
Periaqueductal gray
nTPM: 51.3
Samples: 3

Max nTPM: 63.6
Min nTPM: 44.6
Sample B Female 45.6
Sample C Male 63.6
Sample D Male 44.6
Superior colliculi
nTPM: 58.5
Samples: 4

Max nTPM: 65.9
Min nTPM: 51.8
Sample A Female 65.9
Sample B Female 51.8
Sample C Male 59.1
Sample D Male 57.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.2
Samples: 4

Max nTPM: 46.2
Min nTPM: 39.5
Sample A Male 46.2
Sample B Male 43.0
Sample C Female 39.5
Sample D Female 43.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
293258 Antisense, RP_040617_01_A05, Mouse strain C57BL/6J (56 days, male) 8.7
81599610 Antisense, RP_071126_01_B08, Mouse strain C57BL/6J (56 days, male) 5.6

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