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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.1
nTPM
Monaco:
45.2
nTPM
Schmiedel:
85.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
13.1
HPA sample
nTPM
gdT-cell nTPM: 12.7
Samples: 6
Max nTPM: 17.2
Min nTPM: 10.2
P10809_1007
10.9
P10809_1022
11.4
P10809_1041
17.2
P10809_1060
10.2
P10809_1077
11.3
P10809_1098
14.9
MAIT T-cell nTPM: 13.1
Samples: 6
Max nTPM: 19.0
Min nTPM: 8.7
P10809_1006
11.6
P10809_1024
15.8
P10809_1043
11.2
P10809_1062
8.7
P10809_1083
12.1
P10809_1097
19.0
Memory CD4 T-cell nTPM: 10.0
Samples: 6
Max nTPM: 11.6
Min nTPM: 8.5
P10809_1014
9.2
P10809_1026
11.2
P10809_1045
11.6
P10809_1064
8.7
P10809_1086
10.8
P10809_1113
8.5
Memory CD8 T-cell nTPM: 11.2
Samples: 5
Max nTPM: 14.0
Min nTPM: 7.7
P10809_1012
12.1
P10809_1027
12.8
P10809_1046
14.0
P10809_1065
9.5
P10809_1111
7.7
Naive CD4 T-cell nTPM: 7.3
Samples: 6
Max nTPM: 9.0
Min nTPM: 5.3
P10809_1015
7.3
P10809_1030
7.5
P10809_1049
5.3
P10809_1068
9.0
P10809_1085
8.4
P10809_1112
6.1
Naive CD8 T-cell nTPM: 7.4
Samples: 6
Max nTPM: 10.4
Min nTPM: 5.2
P10809_1016
6.8
P10809_1031
5.2
P10809_1050
7.6
P10809_1069
6.2
P10809_1087
10.4
P10809_1110
7.9
T-reg nTPM: 10.5
Samples: 6
Max nTPM: 17.6
Min nTPM: 4.1
P10809_1018
17.6
P10809_1037
7.1
P10809_1056
11.7
P10809_1075
4.1
P10809_1094
15.3
P10809_1106
7.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
45.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 33.6
Samples: 4
Max nTPM: 40.4
Min nTPM: 30.4
RHH5202_R3573
30.4
RHH5230_R3602
33.1
RHH5259_R3631
40.4
RHH5288_R3660
30.4
Effector memory CD8 T-cell nTPM: 40.9
Samples: 4
Max nTPM: 49.5
Min nTPM: 26.9
RHH5203_R3574
47.3
RHH5231_R3603
26.9
RHH5260_R3632
39.9
RHH5289_R3661
49.5
MAIT T-cell nTPM: 39.6
Samples: 4
Max nTPM: 50.7
Min nTPM: 33.6
RHH5233_R3605
36.8
RHH5205_R3576
33.6
RHH5262_R3634
50.7
RHH5297_R3663
37.1
Memory CD4 T-cell TFH nTPM: 28.2
Samples: 4
Max nTPM: 38.0
Min nTPM: 21.7
RHH5300_R3666
24.4
RHH5236_R3608
21.7
RHH5265_R3637
38.0
RHH5208_R3579
28.6
Memory CD4 T-cell Th1 nTPM: 33.2
Samples: 4
Max nTPM: 38.1
Min nTPM: 24.8
RHH5210_R3581
24.8
RHH5302_R3668
38.1
RHH5238_R3610
33.5
RHH5267_R3639
36.2
Memory CD4 T-cell Th1/Th17 nTPM: 32.7
Samples: 4
Max nTPM: 38.2
Min nTPM: 28.1
RHH5303_R3669
33.0
RHH5211_R3582
28.1
RHH5239_R3611
38.2
RHH5268_R3640
31.4
Memory CD4 T-cell Th17 nTPM: 32.4
Samples: 4
Max nTPM: 45.7
Min nTPM: 18.5
RHH5304_R3670
38.0
RHH5212_R3583
18.5
RHH5240_R3612
45.7
RHH5269_R3641
27.5
Memory CD4 T-cell Th2 nTPM: 32.8
Samples: 4
Max nTPM: 37.7
Min nTPM: 26.5
RHH5305_R3671
30.5
RHH5213_R3584
37.7
RHH5241_R3613
26.5
RHH5270_R3642
36.4
Naive CD4 T-cell nTPM: 30.4
Samples: 4
Max nTPM: 37.2
Min nTPM: 23.8
RHH5306_R3672
29.6
RHH5214_R3585
23.8
RHH5242_R3614
31.0
RHH5271_R3643
37.2
Naive CD8 T-cell nTPM: 20.6
Samples: 4
Max nTPM: 35.4
Min nTPM: 14.4
RHH5201_R3572
14.4
RHH5229_R3601
17.6
RHH5258_R3630
14.8
RHH5287_R3659
35.4
Non-Vd2 gdTCR nTPM: 45.2
Samples: 4
Max nTPM: 56.2
Min nTPM: 36.9
RHH5235_R3607
36.9
RHH5264_R3636
56.2
RHH5207_R3578
43.5
RHH5299_R3665
44.1
T-reg nTPM: 29.0
Samples: 4
Max nTPM: 35.4
Min nTPM: 24.2
RHH5301_R3667
24.2
RHH5237_R3609
29.3
RHH5266_R3638
27.1
RHH5209_R3580
35.4
Terminal effector memory CD4 T-cell nTPM: 38.2
Samples: 2
Max nTPM: 40.3
Min nTPM: 36.1
RHH5243_R3615
36.1
RHH5272_R3644
40.3
Terminal effector memory CD8 T-cell nTPM: 42.3
Samples: 4
Max nTPM: 49.3
Min nTPM: 36.6
RHH5232_R3604
49.3
RHH5204_R3575
36.6
RHH5261_R3633
42.8
RHH5296_R3662
40.6
Vd2 gdTCR nTPM: 39.3
Samples: 4
Max nTPM: 44.2
Min nTPM: 30.2
RHH5234_R3606
41.7
RHH5206_R3577
41.0
RHH5263_R3635
44.2
RHH5298_R3664
30.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
