MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.9 nTPM
HPA Brain:18.2 nTPM
GTEx:13.9 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:25.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.3
1827 Male, age 72, unknown 17.2
2411 Female, age 72, unknown 16.3
2019 Male, age 18, unknown 15.9
1833 Male, age 53, unknown 15.8
1870 Female, age 42, unknown 15.8
2219 Male, age 76, both hemispheres 15.0
2586 Male, age 75, left hemisphere 14.7
1830 Male, age 51, unknown 14.5
2666 Male, age 74, left hemisphere 14.1
2828 Female, age 72, unknown 14.0
Dorsal raphe nucleus
nTPM: 16.1
2298 Female, age 72, unknown 19.8
2047 Male, age 72, unknown 16.0
2750 Male, age 76, both hemispheres 15.8
1828 Male, age 53, unknown 14.6
2016 Female, age 72, unknown 14.6
Inferior colliculus
nTPM: 15.9
2097 Female, age 72, unknown 17.5
1848 Female, age 42, unknown 15.6
2849 Male, age 72, unknown 15.5
1890 Male, age 53, unknown 14.9
Median raphe nucleus
nTPM: 18.2
2220 Male, age 76, midline 18.2
Periaquaductal grey, anterior
nTPM: 17.4
1947 Male, age 18, unknown 17.8
2502 Female, age 75, unknown 17.8
1795 Male, age 51, unknown 16.7
Periaquaductal grey, dorsal
nTPM: 14.3
1840 Male, age 53, unknown 15.3
2850 Male, age 76, both hemispheres 14.8
2464 Female, age 72, unknown 13.8
1831 Male, age 72, unknown 13.4
Periaquaductal grey, lateral
nTPM: 14.9
2272 Male, age 74, both hemispheres 15.2
2053 Male, age 18, unknown 15.1
2140 Male, age 76, both hemispheres 14.5
Pretectal area
nTPM: 17.3
1817 Female, age 42, unknown 20.2
1816 Male, age 51, unknown 19.9
2007 Male, age 72, unknown 19.5
1944 Female, age 72, unknown 19.2
1815 Male, age 53, unknown 18.3
2224 Female, age 72, unknown 16.3
2316 Male, age 76, right hemisphere 16.0
2273 Male, age 74, both hemispheres 15.8
2667 Female, age 75, unknown 15.8
2407 Male, age 75, both hemispheres 15.3
2825 Male, age 18, unknown 14.3
Red nucleus
nTPM: 14.2
1821 Female, age 72, unknown 16.0
2785 Male, age 18, unknown 15.9
2725 Female, age 75, unknown 15.5
1904 Male, age 53, unknown 14.5
1865 Male, age 51, unknown 14.1
1954 Female, age 42, unknown 14.1
2503 Female, age 72, unknown 14.0
2227 Male, age 72, unknown 13.6
2823 Male, age 76, right hemisphere 13.5
2769 Male, age 72, unknown 13.3
2584 Male, age 75, left hemisphere 13.1
2588 Male, age 74, left hemisphere 13.1
Substantia nigra
nTPM: 15.9
1889 Female, age 72, unknown 18.1
2409 Female, age 72, unknown 17.3
1916 Female, age 42, unknown 16.6
2241 Male, age 72, unknown 16.5
2583 Male, age 75, right hemisphere 16.2
1851 Male, age 51, unknown 16.1
2665 Male, age 74, both hemispheres 15.5
1941 Male, age 53, unknown 15.2
2590 Female, age 75, unknown 14.2
2699 Male, age 18, unknown 13.3
Superior colliculus
nTPM: 15.9
2261 Male, age 18, unknown 18.8
2668 Female, age 75, unknown 17.2
1796 Male, age 53, unknown 17.1
1895 Male, age 76, right hemisphere 16.6
2587 Male, age 74, left hemisphere 16.3
2087 Female, age 72, unknown 15.7
1839 Male, age 51, unknown 15.5
1913 Female, age 42, unknown 15.4
1995 Male, age 72, unknown 14.4
2664 Male, age 75, both hemispheres 11.9
Ventral tegmental area
nTPM: 15.8
2218 Male, age 76, both hemispheres 17.4
2410 Female, age 72, unknown 17.0
2223 Female, age 72, unknown 15.2
1915 Female, age 42, unknown 15.1
1942 Male, age 51, unknown 15.1
2021 Male, age 53, unknown 14.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.9
Samples: 139

Max nTPM: 20.1
Min nTPM: 8.4
Std nTPM: 2.0
Median nTPM: 13.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 20.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 19.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 18.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 18.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 18.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 17.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 17.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 17.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 17.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 17.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 17.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.2
FF:10158-103A5 76 years, female 27.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.5
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.0
Sample A Female 15.6
Sample B Female 12.0
Sample C Male 13.7
Sample D Male 12.7
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 16.5
Min nTPM: 13.7
Sample A Female 16.2
Sample B Female 13.7
Sample C Male 16.2
Sample D Male 16.5
Periaqueductal gray
nTPM: 13.0
Samples: 3

Max nTPM: 14.0
Min nTPM: 11.8
Sample B Female 11.8
Sample C Male 14.0
Sample D Male 13.2
Superior colliculi
nTPM: 15.7
Samples: 4

Max nTPM: 16.7
Min nTPM: 13.4
Sample A Female 16.7
Sample B Female 13.4
Sample C Male 15.9
Sample D Male 16.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 29.8
Min nTPM: 23.3
Sample A Male 23.3
Sample B Male 25.4
Sample C Female 24.3
Sample D Female 29.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
686200 Antisense, RP_040916_01_A08, Mouse strain C57BL/6J (56 days, male) 0.1

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