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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
7.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 7.4
Samples: 152
Max nTPM: 12.5
Min nTPM: 2.4
Std nTPM: 2.1
Median nTPM: 7.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
12.5
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
12.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
12.0
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
12.0
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
11.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
11.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
11.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
11.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
11.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
11.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
11.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
11.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
10.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
10.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
10.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
10.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
10.4
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
10.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
9.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
9.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
9.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
9.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
9.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
9.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
9.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
9.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
9.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
9.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
9.1
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
9.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
9.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
9.1
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
9.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
8.8
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
8.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
8.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
8.7
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
8.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
8.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
8.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
8.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
8.6
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
8.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
8.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
8.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
8.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
8.4
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
8.4
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
8.4
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
8.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
8.4
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
8.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
8.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
8.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
8.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
8.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
8.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
8.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
8.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
8.0
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
8.0
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
8.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
7.9
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
7.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
7.7
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
7.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
7.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
7.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
7.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
7.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
7.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
7.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
7.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
7.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
7.3
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
7.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
7.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
7.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
7.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
7.2
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
7.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
6.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
6.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
6.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
6.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
6.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
6.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
6.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
6.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
6.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
6.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
6.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
6.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
6.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
6.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
6.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
6.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
6.4
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
6.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
6.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
6.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
6.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
6.3
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
6.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
6.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
6.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
6.2
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
6.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
6.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
6.1
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
6.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
6.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
6.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
6.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
5.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
5.9
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
5.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
5.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
5.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
5.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
5.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
5.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
5.6
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
5.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
5.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
5.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
5.3
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
5.2
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
5.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
5.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
5.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
4.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
4.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
4.8
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
4.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
4.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
4.4
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
4.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
4.2
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
4.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
4.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
4.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
4.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
4.0
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
4.0
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
3.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
3.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
3.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
3.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
3.3
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
3.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
2.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
33.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 33.1
Samples: 4
Max nTPM: 35.2
Min nTPM: 31.8
Sample A
Male
35.2
Sample B
Male
33.4
Sample C
Female
32.0
Sample D
Female
31.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
