MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA Brain:33.4 nTPM
GTEx:7.7 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Pig:17.6 nTPM
Mouse:23.8 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.2
2586 Male, age 75, left hemisphere 36.2
2411 Female, age 72, unknown 31.9
1827 Male, age 72, unknown 30.8
2828 Female, age 72, unknown 28.6
2219 Male, age 76, both hemispheres 28.0
1833 Male, age 53, unknown 27.0
2666 Male, age 74, left hemisphere 27.0
1870 Female, age 42, unknown 26.3
1830 Male, age 51, unknown 24.4
2019 Male, age 18, unknown 21.9
Dorsal raphe nucleus
nTPM: 29.7
2298 Female, age 72, unknown 34.8
2047 Male, age 72, unknown 32.6
2750 Male, age 76, both hemispheres 28.6
1828 Male, age 53, unknown 26.4
2016 Female, age 72, unknown 25.9
Inferior colliculus
nTPM: 26.7
2849 Male, age 72, unknown 27.8
1848 Female, age 42, unknown 27.7
2097 Female, age 72, unknown 26.6
1890 Male, age 53, unknown 24.9
Median raphe nucleus
nTPM: 33.4
2220 Male, age 76, midline 33.4
Periaquaductal grey, anterior
nTPM: 32.1
2502 Female, age 75, unknown 32.7
1795 Male, age 51, unknown 31.9
1947 Male, age 18, unknown 31.7
Periaquaductal grey, dorsal
nTPM: 28.2
1840 Male, age 53, unknown 34.3
2464 Female, age 72, unknown 27.2
1831 Male, age 72, unknown 25.9
2850 Male, age 76, both hemispheres 25.5
Periaquaductal grey, lateral
nTPM: 27.1
2140 Male, age 76, both hemispheres 30.9
2053 Male, age 18, unknown 26.3
2272 Male, age 74, both hemispheres 24.1
Pretectal area
nTPM: 28.0
2224 Female, age 72, unknown 31.5
1816 Male, age 51, unknown 30.7
2825 Male, age 18, unknown 30.3
2667 Female, age 75, unknown 29.2
2316 Male, age 76, right hemisphere 29.0
2007 Male, age 72, unknown 28.7
1944 Female, age 72, unknown 27.6
1815 Male, age 53, unknown 26.0
2407 Male, age 75, both hemispheres 25.6
1817 Female, age 42, unknown 25.3
2273 Male, age 74, both hemispheres 24.0
Red nucleus
nTPM: 24.1
2584 Male, age 75, left hemisphere 27.2
2588 Male, age 74, left hemisphere 26.4
2725 Female, age 75, unknown 25.3
2769 Male, age 72, unknown 24.9
2227 Male, age 72, unknown 24.7
2785 Male, age 18, unknown 23.9
2503 Female, age 72, unknown 23.7
1821 Female, age 72, unknown 23.6
1954 Female, age 42, unknown 23.3
1904 Male, age 53, unknown 22.8
2823 Male, age 76, right hemisphere 21.9
1865 Male, age 51, unknown 21.0
Substantia nigra
nTPM: 30.4
1916 Female, age 42, unknown 39.0
1851 Male, age 51, unknown 34.2
2241 Male, age 72, unknown 31.1
2699 Male, age 18, unknown 30.6
1941 Male, age 53, unknown 30.4
2665 Male, age 74, both hemispheres 29.8
1889 Female, age 72, unknown 27.9
2590 Female, age 75, unknown 27.7
2409 Female, age 72, unknown 26.6
2583 Male, age 75, right hemisphere 26.4
Superior colliculus
nTPM: 26.9
1796 Male, age 53, unknown 32.4
2261 Male, age 18, unknown 32.3
2664 Male, age 75, both hemispheres 29.4
2087 Female, age 72, unknown 28.2
1895 Male, age 76, right hemisphere 27.2
1839 Male, age 51, unknown 26.8
2668 Female, age 75, unknown 25.8
2587 Male, age 74, left hemisphere 24.7
1913 Female, age 42, unknown 22.5
1995 Male, age 72, unknown 20.1
Ventral tegmental area
nTPM: 30.3
1915 Female, age 42, unknown 33.3
2410 Female, age 72, unknown 32.4
1942 Male, age 51, unknown 31.6
2218 Male, age 76, both hemispheres 31.4
2021 Male, age 53, unknown 28.3
2223 Female, age 72, unknown 24.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.7
Samples: 139

Max nTPM: 15.9
Min nTPM: 1.9
Std nTPM: 2.8
Median nTPM: 7.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 15.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 14.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 14.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 13.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 13.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 12.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 12.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 12.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 12.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.1
FF:10158-103A5 76 years, female 18.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.7
Samples: 4

Max nTPM: 20.8
Min nTPM: 14.2
Sample A Female 20.6
Sample B Female 14.2
Sample C Male 20.8
Sample D Male 15.0
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 18.1
Min nTPM: 14.5
Sample A Female 15.6
Sample B Female 14.5
Sample C Male 18.1
Sample D Male 14.6
Periaqueductal gray
nTPM: 13.7
Samples: 3

Max nTPM: 15.7
Min nTPM: 12.5
Sample B Female 13.0
Sample C Male 15.7
Sample D Male 12.5
Superior colliculi
nTPM: 15.9
Samples: 4

Max nTPM: 16.8
Min nTPM: 14.3
Sample A Female 16.4
Sample B Female 14.3
Sample C Male 16.8
Sample D Male 16.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 25.0
Min nTPM: 23.0
Sample A Male 23.0
Sample B Male 25.0
Sample C Female 23.0
Sample D Female 24.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
69838746 Antisense, RP_050321_03_G09, Mouse strain C57BL/6J (56 days, male) 1.7
72104170 Antisense, RP_051017_03_G01, Mouse strain C57BL/6J (56 days, male) 0.8

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