MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:105.7 nTPM
HPA Brain:58.8 nTPM
GTEx:105.7 nTPM
FANTOM5:134.3 Scaled Tags Per Million
Pig:93.7 nTPM
Mouse:155.5 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.4
2019 Male, age 18, unknown 42.6
2219 Male, age 76, both hemispheres 38.9
2411 Female, age 72, unknown 38.9
1833 Male, age 53, unknown 38.2
1870 Female, age 42, unknown 37.2
1827 Male, age 72, unknown 35.8
2666 Male, age 74, left hemisphere 35.1
1830 Male, age 51, unknown 34.6
2828 Female, age 72, unknown 33.0
2586 Male, age 75, left hemisphere 29.6
Dorsal raphe nucleus
nTPM: 45.5
2047 Male, age 72, unknown 52.5
1828 Male, age 53, unknown 50.9
2298 Female, age 72, unknown 43.7
2750 Male, age 76, both hemispheres 43.0
2016 Female, age 72, unknown 37.2
Inferior colliculus
nTPM: 39.9
1890 Male, age 53, unknown 43.9
2097 Female, age 72, unknown 43.3
1848 Female, age 42, unknown 40.0
2849 Male, age 72, unknown 32.6
Median raphe nucleus
nTPM: 53.9
2220 Male, age 76, midline 53.9
Periaquaductal grey, anterior
nTPM: 36.7
2502 Female, age 75, unknown 41.5
1947 Male, age 18, unknown 37.6
1795 Male, age 51, unknown 30.9
Periaquaductal grey, dorsal
nTPM: 39.0
2850 Male, age 76, both hemispheres 46.6
1831 Male, age 72, unknown 38.6
1840 Male, age 53, unknown 37.8
2464 Female, age 72, unknown 32.8
Periaquaductal grey, lateral
nTPM: 37.7
2272 Male, age 74, both hemispheres 40.7
2140 Male, age 76, both hemispheres 38.2
2053 Male, age 18, unknown 34.2
Pretectal area
nTPM: 42.4
1944 Female, age 72, unknown 55.3
2667 Female, age 75, unknown 48.7
1817 Female, age 42, unknown 48.2
2007 Male, age 72, unknown 44.9
1816 Male, age 51, unknown 44.8
2273 Male, age 74, both hemispheres 42.8
1815 Male, age 53, unknown 38.9
2224 Female, age 72, unknown 38.0
2825 Male, age 18, unknown 35.1
2316 Male, age 76, right hemisphere 34.9
2407 Male, age 75, both hemispheres 34.7
Red nucleus
nTPM: 37.8
1821 Female, age 72, unknown 48.9
1954 Female, age 42, unknown 45.8
1865 Male, age 51, unknown 40.7
1904 Male, age 53, unknown 38.3
2725 Female, age 75, unknown 38.3
2785 Male, age 18, unknown 37.4
2227 Male, age 72, unknown 35.3
2769 Male, age 72, unknown 35.2
2588 Male, age 74, left hemisphere 34.9
2823 Male, age 76, right hemisphere 34.1
2503 Female, age 72, unknown 34.0
2584 Male, age 75, left hemisphere 30.1
Substantia nigra
nTPM: 58.8
1916 Female, age 42, unknown 93.3
2409 Female, age 72, unknown 76.4
2241 Male, age 72, unknown 73.7
2699 Male, age 18, unknown 60.6
1851 Male, age 51, unknown 60.4
1889 Female, age 72, unknown 57.9
1941 Male, age 53, unknown 55.4
2665 Male, age 74, both hemispheres 40.0
2590 Female, age 75, unknown 36.4
2583 Male, age 75, right hemisphere 34.2
Superior colliculus
nTPM: 36.6
2087 Female, age 72, unknown 46.2
2668 Female, age 75, unknown 41.4
2587 Male, age 74, left hemisphere 38.7
1895 Male, age 76, right hemisphere 37.5
1839 Male, age 51, unknown 36.9
1796 Male, age 53, unknown 36.6
2261 Male, age 18, unknown 36.3
1913 Female, age 42, unknown 33.2
1995 Male, age 72, unknown 30.6
2664 Male, age 75, both hemispheres 28.5
Ventral tegmental area
nTPM: 50.3
1915 Female, age 42, unknown 61.1
2218 Male, age 76, both hemispheres 56.6
2410 Female, age 72, unknown 54.7
1942 Male, age 51, unknown 48.1
2021 Male, age 53, unknown 40.8
2223 Female, age 72, unknown 40.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 105.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.7
Samples: 139

Max nTPM: 244.2
Min nTPM: 62.5
Std nTPM: 30.7
Median nTPM: 101.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 244.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 197.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 196.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 190.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 188.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 176.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 169.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 161.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 158.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 153.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 150.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 134.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 134.3
FF:10158-103A5 76 years, female 134.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.8
Samples: 4

Max nTPM: 117.4
Min nTPM: 80.4
Sample A Female 117.4
Sample B Female 80.4
Sample C Male 83.0
Sample D Male 86.3
Midbrain
nTPM: 93.7
Samples: 4

Max nTPM: 148.8
Min nTPM: 63.6
Sample A Female 148.8
Sample B Female 97.9
Sample C Male 64.5
Sample D Male 63.6
Periaqueductal gray
nTPM: 71.7
Samples: 3

Max nTPM: 73.4
Min nTPM: 69.6
Sample B Female 72.0
Sample C Male 73.4
Sample D Male 69.6
Superior colliculi
nTPM: 84.8
Samples: 4

Max nTPM: 107.1
Min nTPM: 72.6
Sample A Female 107.1
Sample B Female 80.6
Sample C Male 72.6
Sample D Male 78.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 155.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 155.5
Samples: 4

Max nTPM: 160.8
Min nTPM: 150.2
Sample A Male 160.8
Sample B Male 153.4
Sample C Female 150.2
Sample D Female 157.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
73513474 Antisense, RP_051121_02_B11, Mouse strain C57BL/6J (56 days, male) 0.9

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