MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:222.8 nTPM
HPA Brain:160.1 nTPM
GTEx:222.8 nTPM
FANTOM5:265.7 Scaled Tags Per Million
Pig:106.6 nTPM
Mouse:60.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 160.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 126.2
2666 Male, age 74, left hemisphere 165.1
1830 Male, age 51, unknown 145.2
1870 Female, age 42, unknown 141.6
1833 Male, age 53, unknown 139.9
2586 Male, age 75, left hemisphere 131.0
2828 Female, age 72, unknown 128.8
2411 Female, age 72, unknown 113.3
2019 Male, age 18, unknown 107.2
1827 Male, age 72, unknown 102.4
2219 Male, age 76, both hemispheres 87.8
Dorsal raphe nucleus
nTPM: 94.9
2016 Female, age 72, unknown 125.0
2750 Male, age 76, both hemispheres 114.1
1828 Male, age 53, unknown 95.1
2047 Male, age 72, unknown 73.0
2298 Female, age 72, unknown 67.2
Inferior colliculus
nTPM: 86.1
2849 Male, age 72, unknown 105.3
1890 Male, age 53, unknown 95.0
1848 Female, age 42, unknown 82.9
2097 Female, age 72, unknown 61.1
Median raphe nucleus
nTPM: 114.2
2220 Male, age 76, midline 114.2
Periaquaductal grey, anterior
nTPM: 93.0
2502 Female, age 75, unknown 111.3
1795 Male, age 51, unknown 85.0
1947 Male, age 18, unknown 82.6
Periaquaductal grey, dorsal
nTPM: 101.2
2850 Male, age 76, both hemispheres 133.2
1831 Male, age 72, unknown 109.7
2464 Female, age 72, unknown 97.4
1840 Male, age 53, unknown 64.5
Periaquaductal grey, lateral
nTPM: 93.5
2140 Male, age 76, both hemispheres 111.4
2053 Male, age 18, unknown 103.8
2272 Male, age 74, both hemispheres 65.4
Pretectal area
nTPM: 91.5
1815 Male, age 53, unknown 126.6
2407 Male, age 75, both hemispheres 111.8
2316 Male, age 76, right hemisphere 106.1
2825 Male, age 18, unknown 103.8
1817 Female, age 42, unknown 96.4
2007 Male, age 72, unknown 86.0
2667 Female, age 75, unknown 81.1
2224 Female, age 72, unknown 77.3
1816 Male, age 51, unknown 77.0
1944 Female, age 72, unknown 73.6
2273 Male, age 74, both hemispheres 67.3
Red nucleus
nTPM: 160.1
2503 Female, age 72, unknown 223.4
2588 Male, age 74, left hemisphere 183.7
1865 Male, age 51, unknown 172.7
1904 Male, age 53, unknown 171.2
2725 Female, age 75, unknown 159.0
1821 Female, age 72, unknown 150.4
2227 Male, age 72, unknown 150.3
1954 Female, age 42, unknown 148.1
2769 Male, age 72, unknown 147.4
2823 Male, age 76, right hemisphere 141.2
2584 Male, age 75, left hemisphere 141.0
2785 Male, age 18, unknown 133.0
Substantia nigra
nTPM: 109.3
2699 Male, age 18, unknown 160.1
2665 Male, age 74, both hemispheres 139.9
2590 Female, age 75, unknown 111.3
2583 Male, age 75, right hemisphere 108.4
1851 Male, age 51, unknown 107.6
2409 Female, age 72, unknown 100.4
1941 Male, age 53, unknown 94.4
1889 Female, age 72, unknown 92.5
2241 Male, age 72, unknown 90.7
1916 Female, age 42, unknown 87.3
Superior colliculus
nTPM: 112.7
1913 Female, age 42, unknown 171.5
1995 Male, age 72, unknown 167.3
2587 Male, age 74, left hemisphere 128.6
1839 Male, age 51, unknown 113.3
2664 Male, age 75, both hemispheres 104.1
2668 Female, age 75, unknown 96.1
1796 Male, age 53, unknown 92.8
2087 Female, age 72, unknown 86.0
2261 Male, age 18, unknown 85.4
1895 Male, age 76, right hemisphere 82.3
Ventral tegmental area
nTPM: 107.7
2223 Female, age 72, unknown 140.2
2021 Male, age 53, unknown 108.5
2218 Male, age 76, both hemispheres 106.1
1942 Male, age 51, unknown 101.5
1915 Female, age 42, unknown 98.3
2410 Female, age 72, unknown 91.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 222.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 222.8
Samples: 139

Max nTPM: 637.5
Min nTPM: 52.1
Std nTPM: 116.4
Median nTPM: 195.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 637.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 631.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 582.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 552.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 527.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 509.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 494.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 456.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 444.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 436.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 408.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 265.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 265.7
FF:10158-103A5 76 years, female 265.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 106.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 98.3
Samples: 4

Max nTPM: 121.5
Min nTPM: 82.9
Sample A Female 98.1
Sample B Female 90.6
Sample C Male 82.9
Sample D Male 121.5
Midbrain
nTPM: 106.7
Samples: 4

Max nTPM: 190.5
Min nTPM: 56.1
Sample A Female 190.5
Sample B Female 115.9
Sample C Male 64.1
Sample D Male 56.1
Periaqueductal gray
nTPM: 87.2
Samples: 3

Max nTPM: 93.8
Min nTPM: 83.3
Sample B Female 93.8
Sample C Male 84.5
Sample D Male 83.3
Superior colliculi
nTPM: 85.5
Samples: 4

Max nTPM: 91.0
Min nTPM: 72.3
Sample A Female 91.0
Sample B Female 72.3
Sample C Male 90.0
Sample D Male 88.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 62.2
Min nTPM: 58.3
Sample A Male 60.6
Sample B Male 58.3
Sample C Female 59.9
Sample D Female 62.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71574416 Antisense, RP_050915_03_F09, Mouse strain C57BL/6J (56 days, male) 0.2

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