MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.2 nTPM
HPA Brain:20.7 nTPM
GTEx:9.2 nTPM
FANTOM5:40.2 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:37.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.1
2411 Female, age 72, unknown 21.4
2019 Male, age 18, unknown 20.5
1827 Male, age 72, unknown 17.8
1870 Female, age 42, unknown 16.9
2219 Male, age 76, both hemispheres 16.0
1833 Male, age 53, unknown 15.0
1830 Male, age 51, unknown 14.8
2666 Male, age 74, left hemisphere 14.0
2828 Female, age 72, unknown 12.8
2586 Male, age 75, left hemisphere 12.2
Dorsal raphe nucleus
nTPM: 19.3
2298 Female, age 72, unknown 22.2
1828 Male, age 53, unknown 20.7
2047 Male, age 72, unknown 20.2
2750 Male, age 76, both hemispheres 19.2
2016 Female, age 72, unknown 14.4
Inferior colliculus
nTPM: 17.8
2097 Female, age 72, unknown 23.0
1890 Male, age 53, unknown 18.1
1848 Female, age 42, unknown 16.0
2849 Male, age 72, unknown 14.0
Median raphe nucleus
nTPM: 20.7
2220 Male, age 76, midline 20.7
Periaquaductal grey, anterior
nTPM: 16.2
1947 Male, age 18, unknown 17.3
2502 Female, age 75, unknown 16.1
1795 Male, age 51, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 15.3
1840 Male, age 53, unknown 16.3
2850 Male, age 76, both hemispheres 15.1
1831 Male, age 72, unknown 14.9
2464 Female, age 72, unknown 14.8
Periaquaductal grey, lateral
nTPM: 15.4
2272 Male, age 74, both hemispheres 16.7
2053 Male, age 18, unknown 15.0
2140 Male, age 76, both hemispheres 14.5
Pretectal area
nTPM: 18.3
2007 Male, age 72, unknown 23.0
1816 Male, age 51, unknown 22.0
1817 Female, age 42, unknown 21.1
1944 Female, age 72, unknown 20.6
2667 Female, age 75, unknown 18.5
2224 Female, age 72, unknown 17.6
2273 Male, age 74, both hemispheres 17.6
1815 Male, age 53, unknown 17.5
2316 Male, age 76, right hemisphere 15.7
2825 Male, age 18, unknown 15.1
2407 Male, age 75, both hemispheres 12.2
Red nucleus
nTPM: 17.4
1821 Female, age 72, unknown 26.3
1954 Female, age 42, unknown 19.2
2725 Female, age 75, unknown 18.1
1904 Male, age 53, unknown 17.6
2503 Female, age 72, unknown 17.3
2785 Male, age 18, unknown 16.9
2769 Male, age 72, unknown 16.8
1865 Male, age 51, unknown 16.7
2227 Male, age 72, unknown 16.5
2823 Male, age 76, right hemisphere 16.5
2588 Male, age 74, left hemisphere 14.4
2584 Male, age 75, left hemisphere 12.8
Substantia nigra
nTPM: 20.5
1916 Female, age 42, unknown 28.1
2241 Male, age 72, unknown 23.2
1941 Male, age 53, unknown 22.7
1851 Male, age 51, unknown 22.6
1889 Female, age 72, unknown 22.0
2409 Female, age 72, unknown 21.1
2590 Female, age 75, unknown 17.3
2665 Male, age 74, both hemispheres 16.1
2699 Male, age 18, unknown 16.1
2583 Male, age 75, right hemisphere 15.4
Superior colliculus
nTPM: 15.7
2587 Male, age 74, left hemisphere 19.5
1895 Male, age 76, right hemisphere 18.0
2087 Female, age 72, unknown 18.0
2261 Male, age 18, unknown 17.4
2668 Female, age 75, unknown 16.7
1796 Male, age 53, unknown 15.6
1839 Male, age 51, unknown 15.0
1913 Female, age 42, unknown 13.8
1995 Male, age 72, unknown 12.0
2664 Male, age 75, both hemispheres 10.8
Ventral tegmental area
nTPM: 18.3
2410 Female, age 72, unknown 21.7
2218 Male, age 76, both hemispheres 21.4
1915 Female, age 42, unknown 20.2
2223 Female, age 72, unknown 16.4
1942 Male, age 51, unknown 15.9
2021 Male, age 53, unknown 13.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.2
Samples: 139

Max nTPM: 22.8
Min nTPM: 4.0
Std nTPM: 3.1
Median nTPM: 8.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 22.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 16.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 16.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 15.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 14.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 13.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.2
FF:10158-103A5 76 years, female 40.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.0
Samples: 4

Max nTPM: 33.8
Min nTPM: 14.7
Sample A Female 33.8
Sample B Female 20.1
Sample C Male 27.2
Sample D Male 14.7
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 37.3
Min nTPM: 19.8
Sample A Female 19.8
Sample B Female 24.0
Sample C Male 37.3
Sample D Male 29.8
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 27.0
Min nTPM: 20.1
Sample B Female 21.1
Sample C Male 27.0
Sample D Male 20.1
Superior colliculi
nTPM: 29.0
Samples: 4

Max nTPM: 36.4
Min nTPM: 22.3
Sample A Female 30.6
Sample B Female 22.3
Sample C Male 36.4
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.3
Samples: 4

Max nTPM: 39.6
Min nTPM: 34.0
Sample A Male 34.0
Sample B Male 39.6
Sample C Female 38.4
Sample D Female 37.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73497648 Antisense, RP_051121_01_D09, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org