MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.9 nTPM
HPA Brain:22.8 nTPM
GTEx:8.9 nTPM
FANTOM5:20.7 Scaled Tags Per Million
Pig:31.6 nTPM
Mouse:15.7 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.4
2666 Male, age 74, left hemisphere 26.4
2219 Male, age 76, both hemispheres 22.3
2586 Male, age 75, left hemisphere 22.0
1870 Female, age 42, unknown 20.7
1830 Male, age 51, unknown 20.0
2828 Female, age 72, unknown 19.9
1833 Male, age 53, unknown 19.2
2019 Male, age 18, unknown 18.1
1827 Male, age 72, unknown 17.8
2411 Female, age 72, unknown 17.1
Dorsal raphe nucleus
nTPM: 16.7
2750 Male, age 76, both hemispheres 19.3
2047 Male, age 72, unknown 17.7
1828 Male, age 53, unknown 17.6
2016 Female, age 72, unknown 16.4
2298 Female, age 72, unknown 12.7
Inferior colliculus
nTPM: 19.6
2849 Male, age 72, unknown 24.7
1890 Male, age 53, unknown 20.3
1848 Female, age 42, unknown 17.2
2097 Female, age 72, unknown 16.0
Median raphe nucleus
nTPM: 21.4
2220 Male, age 76, midline 21.4
Periaquaductal grey, anterior
nTPM: 15.7
2502 Female, age 75, unknown 19.5
1795 Male, age 51, unknown 16.3
1947 Male, age 18, unknown 11.4
Periaquaductal grey, dorsal
nTPM: 20.0
2850 Male, age 76, both hemispheres 25.4
2464 Female, age 72, unknown 18.6
1831 Male, age 72, unknown 18.2
1840 Male, age 53, unknown 17.7
Periaquaductal grey, lateral
nTPM: 18.2
2140 Male, age 76, both hemispheres 21.9
2053 Male, age 18, unknown 19.3
2272 Male, age 74, both hemispheres 13.4
Pretectal area
nTPM: 19.7
1817 Female, age 42, unknown 25.0
1815 Male, age 53, unknown 23.7
2007 Male, age 72, unknown 22.3
1816 Male, age 51, unknown 21.7
1944 Female, age 72, unknown 20.8
2407 Male, age 75, both hemispheres 19.7
2667 Female, age 75, unknown 19.1
2825 Male, age 18, unknown 18.5
2224 Female, age 72, unknown 17.8
2316 Male, age 76, right hemisphere 16.0
2273 Male, age 74, both hemispheres 12.4
Red nucleus
nTPM: 20.1
2503 Female, age 72, unknown 27.2
2785 Male, age 18, unknown 22.4
2588 Male, age 74, left hemisphere 21.7
1865 Male, age 51, unknown 20.7
2584 Male, age 75, left hemisphere 20.6
2725 Female, age 75, unknown 19.5
2823 Male, age 76, right hemisphere 19.3
1954 Female, age 42, unknown 19.2
1904 Male, age 53, unknown 19.1
2227 Male, age 72, unknown 18.0
1821 Female, age 72, unknown 17.5
2769 Male, age 72, unknown 16.5
Substantia nigra
nTPM: 22.8
2699 Male, age 18, unknown 33.1
2665 Male, age 74, both hemispheres 27.4
2409 Female, age 72, unknown 24.6
1916 Female, age 42, unknown 23.4
2241 Male, age 72, unknown 22.3
1941 Male, age 53, unknown 20.9
1851 Male, age 51, unknown 20.8
1889 Female, age 72, unknown 20.3
2583 Male, age 75, right hemisphere 18.4
2590 Female, age 75, unknown 16.8
Superior colliculus
nTPM: 19.3
2668 Female, age 75, unknown 21.1
1995 Male, age 72, unknown 20.5
1796 Male, age 53, unknown 20.4
1913 Female, age 42, unknown 20.4
2087 Female, age 72, unknown 20.3
2587 Male, age 74, left hemisphere 19.6
1839 Male, age 51, unknown 19.4
2664 Male, age 75, both hemispheres 17.2
1895 Male, age 76, right hemisphere 17.1
2261 Male, age 18, unknown 16.7
Ventral tegmental area
nTPM: 21.1
2223 Female, age 72, unknown 23.9
1915 Female, age 42, unknown 21.9
2410 Female, age 72, unknown 21.8
2218 Male, age 76, both hemispheres 21.4
2021 Male, age 53, unknown 19.0
1942 Male, age 51, unknown 18.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.9
Samples: 139

Max nTPM: 12.8
Min nTPM: 5.6
Std nTPM: 1.2
Median nTPM: 8.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 12.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 11.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 11.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 11.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 11.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 11.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 11.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 11.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 11.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 10.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 10.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.7
FF:10158-103A5 76 years, female 20.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.6
Samples: 4

Max nTPM: 34.2
Min nTPM: 28.1
Sample A Female 31.0
Sample B Female 28.1
Sample C Male 34.2
Sample D Male 33.1
Midbrain
nTPM: 27.6
Samples: 4

Max nTPM: 31.2
Min nTPM: 21.6
Sample A Female 31.2
Sample B Female 30.3
Sample C Male 27.3
Sample D Male 21.6
Periaqueductal gray
nTPM: 22.5
Samples: 3

Max nTPM: 24.6
Min nTPM: 21.2
Sample B Female 24.6
Sample C Male 21.2
Sample D Male 21.8
Superior colliculi
nTPM: 26.5
Samples: 4

Max nTPM: 28.4
Min nTPM: 21.5
Sample A Female 28.1
Sample B Female 21.5
Sample C Male 28.4
Sample D Male 27.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 16.8
Min nTPM: 13.2
Sample A Male 13.2
Sample B Male 16.3
Sample C Female 16.8
Sample D Female 16.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
79536647 Antisense, RP_071018_01_B02, Mouse strain C57BL/6J (56 days, male) 1.6

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