MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA Brain:19.5 nTPM
GTEx:5.6 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:22.1 nTPM
Mouse:5.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.8
2219 Male, age 76, both hemispheres 19.6
2828 Female, age 72, unknown 19.4
2666 Male, age 74, left hemisphere 18.1
1833 Male, age 53, unknown 18.0
1870 Female, age 42, unknown 18.0
1830 Male, age 51, unknown 17.8
2019 Male, age 18, unknown 17.3
1827 Male, age 72, unknown 17.0
2411 Female, age 72, unknown 17.0
2586 Male, age 75, left hemisphere 16.3
Dorsal raphe nucleus
nTPM: 18.4
2016 Female, age 72, unknown 22.4
1828 Male, age 53, unknown 17.9
2047 Male, age 72, unknown 17.5
2298 Female, age 72, unknown 17.2
2750 Male, age 76, both hemispheres 16.8
Inferior colliculus
nTPM: 19.5
1890 Male, age 53, unknown 20.4
1848 Female, age 42, unknown 19.4
2097 Female, age 72, unknown 19.4
2849 Male, age 72, unknown 18.6
Median raphe nucleus
nTPM: 15.3
2220 Male, age 76, midline 15.3
Periaquaductal grey, anterior
nTPM: 18.7
2502 Female, age 75, unknown 19.1
1947 Male, age 18, unknown 18.7
1795 Male, age 51, unknown 18.2
Periaquaductal grey, dorsal
nTPM: 19.4
1840 Male, age 53, unknown 20.0
1831 Male, age 72, unknown 19.7
2464 Female, age 72, unknown 19.4
2850 Male, age 76, both hemispheres 18.4
Periaquaductal grey, lateral
nTPM: 18.4
2140 Male, age 76, both hemispheres 19.9
2053 Male, age 18, unknown 19.1
2272 Male, age 74, both hemispheres 16.4
Pretectal area
nTPM: 17.7
1944 Female, age 72, unknown 18.9
1816 Male, age 51, unknown 18.7
2224 Female, age 72, unknown 18.4
2316 Male, age 76, right hemisphere 18.3
1815 Male, age 53, unknown 18.1
2273 Male, age 74, both hemispheres 18.1
1817 Female, age 42, unknown 17.8
2825 Male, age 18, unknown 17.4
2667 Female, age 75, unknown 17.1
2007 Male, age 72, unknown 16.9
2407 Male, age 75, both hemispheres 14.8
Red nucleus
nTPM: 18.6
2503 Female, age 72, unknown 21.2
1904 Male, age 53, unknown 20.2
1954 Female, age 42, unknown 20.1
2227 Male, age 72, unknown 19.4
1821 Female, age 72, unknown 18.8
2769 Male, age 72, unknown 18.8
2588 Male, age 74, left hemisphere 18.7
1865 Male, age 51, unknown 18.6
2725 Female, age 75, unknown 17.1
2785 Male, age 18, unknown 17.1
2823 Male, age 76, right hemisphere 17.0
2584 Male, age 75, left hemisphere 16.5
Substantia nigra
nTPM: 18.8
2699 Male, age 18, unknown 20.8
2409 Female, age 72, unknown 20.0
2665 Male, age 74, both hemispheres 19.9
2590 Female, age 75, unknown 19.8
1889 Female, age 72, unknown 18.9
2241 Male, age 72, unknown 18.9
2583 Male, age 75, right hemisphere 18.4
1851 Male, age 51, unknown 18.3
1916 Female, age 42, unknown 17.7
1941 Male, age 53, unknown 15.4
Superior colliculus
nTPM: 18.6
1995 Male, age 72, unknown 20.5
1913 Female, age 42, unknown 20.0
2087 Female, age 72, unknown 19.4
2668 Female, age 75, unknown 19.1
2587 Male, age 74, left hemisphere 18.9
2261 Male, age 18, unknown 18.2
1796 Male, age 53, unknown 18.0
1839 Male, age 51, unknown 17.9
1895 Male, age 76, right hemisphere 16.9
2664 Male, age 75, both hemispheres 16.6
Ventral tegmental area
nTPM: 17.5
2021 Male, age 53, unknown 18.1
1942 Male, age 51, unknown 18.0
2410 Female, age 72, unknown 18.0
1915 Female, age 42, unknown 17.9
2218 Male, age 76, both hemispheres 16.8
2223 Female, age 72, unknown 15.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.6
Samples: 139

Max nTPM: 11.7
Min nTPM: 2.4
Std nTPM: 1.5
Median nTPM: 5.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 11.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 11.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 9.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 8.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 8.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 8.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 8.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 8.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 8.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 7.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 7.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.8
Samples: 4

Max nTPM: 23.0
Min nTPM: 16.2
Sample A Female 21.4
Sample B Female 23.0
Sample C Male 18.6
Sample D Male 16.2
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 22.4
Min nTPM: 17.3
Sample A Female 22.0
Sample B Female 22.4
Sample C Male 17.3
Sample D Male 17.6
Periaqueductal gray
nTPM: 18.5
Samples: 3

Max nTPM: 19.8
Min nTPM: 17.9
Sample B Female 19.8
Sample C Male 17.9
Sample D Male 17.9
Superior colliculi
nTPM: 22.1
Samples: 4

Max nTPM: 28.8
Min nTPM: 18.8
Sample A Female 21.0
Sample B Female 28.8
Sample C Male 19.9
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.7
Sample A Male 4.7
Sample B Male 5.6
Sample C Female 5.7
Sample D Female 5.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69353741 Antisense, RP_050412_02_F06, Mouse strain C57BL/6J (56 days, male) 0.1

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