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                                  • KLC4
                                  BRAIN AMYGDALA Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
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                                  Brain proteome
                                  Amygdala
                                  AMYGDALA - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  Consensus:17.0 nTPM
                                  HPA Brain:23.6 nTPM
                                  GTEx:17.0 nTPM
                                  FANTOM5:20.5 Scaled Tags Per Million
                                  Pig:9.5 nTPM
                                  Mouse:13.7 nTPM
                                  Allen mouse:0.6 Expression energy

                                  AMYGDALA - HPA Brain RNA-seq
                                  Max nTPM 23.6
                                  Sample id Sample description nTPM
                                  Amygdala
                                  nTPM: 22.6
                                  2814 Male, age 76, right hemisphere 25.5
                                  2695 Female, age 67, right hemisphere 24.6
                                  2517 Female, age 94, left hemisphere 21.8
                                  1987 Female, age 91, left hemisphere 21.1
                                  2514 Male, age 75, right hemisphere 19.8
                                  Basal amygdala
                                  nTPM: 23.6
                                  2827 Female, age 67, right hemisphere 25.8
                                  2243 Female, age 91, right hemisphere 25.3
                                  2685 Female, age 94, left hemisphere 24.7
                                  2609 Male, age 75, right hemisphere 24.6
                                  1955 Male, age 76, both hemispheres 22.8
                                  2110 Male, age 80, left hemisphere 18.6
                                  Central amygdala
                                  nTPM: 23.2
                                  1905 Male, age 76, both hemispheres 26.7
                                  2701 Female, age 91, right hemisphere 24.9
                                  2515 Male, age 75, right hemisphere 21.9
                                  2826 Female, age 94, left hemisphere 21.8
                                  2239 Male, age 80, left hemisphere 20.4
                                  Corticomedial amygdala
                                  nTPM: 22.1
                                  2535 Female, age 67, right hemisphere 24.2
                                  2242 Female, age 91, right hemisphere 23.1
                                  2429 Female, age 94, left hemisphere 23.0
                                  2428 Male, age 75, right hemisphere 21.5
                                  2240 Male, age 76, both hemispheres 21.1
                                  2829 Male, age 80, left hemisphere 19.5
                                  Lateral amygdala
                                  nTPM: 23.4
                                  2830 Female, age 67, right hemisphere 26.2
                                  2516 Male, age 75, right hemisphere 25.1
                                  2255 Female, age 91, right hemisphere 24.2
                                  1883 Male, age 76, both hemispheres 21.9
                                  2256 Male, age 80, left hemisphere 21.6
                                  2534 Female, age 94, left hemisphere 21.5

                                  AMYGDALA - GTEx RNA-seqi

                                  RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                  Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 17.0
                                  GTEx sample id Sample description nTPM
                                  14.816.919.28.224.60246810121416182022242628
                                  14.816.919.28.224.60246810121416182022242628
                                  Brain - Amygdala
                                  Average nTPM: 17.0
                                  Samples: 152

                                  Max nTPM: 28.7
                                  Min nTPM: 8.2
                                  Std nTPM: 3.3
                                  Median nTPM: 16.9
                                  GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 28.7
                                  GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 24.6
                                  GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 24.2
                                  GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 24.1
                                  GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 23.9
                                  GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 23.9
                                  GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 22.4
                                  GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 22.4
                                  GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 22.1
                                  GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 22.0
                                  GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 21.8
                                  GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 21.6
                                  GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 21.4
                                  GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 21.3
                                  GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 21.3
                                  GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 21.3
                                  GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 21.2
                                  GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 21.0
                                  GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 20.8
                                  GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 20.6
                                  GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 20.5
                                  GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 20.5
                                  GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 20.4
                                  GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 20.3
                                  GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 20.3
                                  GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 20.3
                                  GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 20.3
                                  GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 20.0
                                  GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 20.0
                                  GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 19.8
                                  GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 19.8
                                  GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 19.6
                                  GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 19.5
                                  GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 19.5
                                  GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 19.5
                                  GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 19.4
                                  GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 19.3
                                  GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 19.3
                                  GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 19.1
                                  GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 19.1
                                  GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 19.1
                                  GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 19.0
                                  GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 18.7
                                  GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 18.7
                                  GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 18.5
                                  GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 18.4
                                  GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 18.4
                                  GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 18.4
                                  GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 18.3
                                  GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 18.3
                                  GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 18.2
                                  GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 18.2
                                  GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 18.2
                                  GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 18.0
                                  GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 18.0
                                  GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 18.0
                                  GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 18.0
                                  GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 17.9
                                  GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 17.9
                                  GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 17.8
                                  GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 17.8
                                  GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 17.8
                                  GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 17.7
                                  GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 17.7
                                  GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 17.6
                                  GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 17.6
                                  GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 17.6
                                  GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 17.6
                                  GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 17.5
                                  GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 17.4
                                  GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 17.2
                                  GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 17.2
                                  GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 17.2
                                  GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 17.2
                                  GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 17.1
                                  GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 16.9
                                  GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 16.9
                                  GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 16.8
                                  GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 16.7
                                  GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 16.6
                                  GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 16.6
                                  GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 16.6
                                  GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 16.5
                                  GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 16.5
                                  GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 16.4
                                  GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 16.2
                                  GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 16.2
                                  GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 16.2
                                  GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 16.2
                                  GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 16.1
                                  GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 16.1
                                  GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 16.1
                                  GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 15.8
                                  GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 15.7
                                  GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 15.6
                                  GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 15.6
                                  GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 15.6
                                  GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 15.5
                                  GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 15.5
                                  GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 15.5
                                  GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 15.4
                                  GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 15.3
                                  GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 15.3
                                  GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 15.3
                                  GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 15.2
                                  GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 15.1
                                  GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 15.0
                                  GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 15.0
                                  GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 14.9
                                  GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 14.9
                                  GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 14.8
                                  GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 14.8
                                  GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 14.8
                                  GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 14.8
                                  GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 14.6
                                  GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 14.6
                                  GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 14.5
                                  GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 14.5
                                  GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 14.5
                                  GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 14.5
                                  GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 14.4
                                  GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 14.4
                                  GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 14.3
                                  GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 14.3
                                  GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 14.3
                                  GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 14.2
                                  GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 14.1
                                  GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 14.1
                                  GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 14.1
                                  GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 14.0
                                  GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 13.8
                                  GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 13.8
                                  GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 13.7
                                  GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 13.7
                                  GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 13.6
                                  GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 13.1
                                  GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 13.0
                                  GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 13.0
                                  GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 12.9
                                  GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 12.8
                                  GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 12.6
                                  GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 12.4
                                  GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 12.3
                                  GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 11.9
                                  GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 11.8
                                  GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 11.7
                                  GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 11.3
                                  GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 10.6
                                  GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 10.5
                                  GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 8.7
                                  GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 8.4
                                  GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 8.2
                                  Show allShow less

                                  AMYGDALA - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 20.5
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Amygdala
                                  Scaled Tags Per Million: 20.5
                                  FF:10151-102I7 76 years, female 20.5

                                  AMYGDALA - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 9.5
                                  Pig sample Sample description nTPM
                                  8.39.110.38.011.701234567891011
                                  8.39.110.38.011.701234567891011
                                  Amygdala
                                  nTPM: 9.5
                                  Samples: 4

                                  Max nTPM: 11.7
                                  Min nTPM: 8.0
                                  Sample A Female 11.7
                                  Sample B Female 8.4
                                  Sample C Male 8.0
                                  Sample D Male 9.8

                                  AMYGDALA - Mouse RNA-seqi

                                  RNA-seq data obtained from mouse brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 13.7
                                  Mouse sample Sample description nTPM
                                  13.714.314.414.314.802468101214
                                  13.714.314.414.314.802468101214
                                  Amygdala
                                  nTPM: 13.8
                                  Samples: 4

                                  Max nTPM: 14.8
                                  Min nTPM: 11.7
                                  Sample A Male 11.7
                                  Sample B Male 14.3
                                  Sample C Female 14.3
                                  Sample D Female 14.8

                                  AMYGDALA - Allen Mouse ISHi

                                  In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                  Max Expression energy 0.6
                                  Allen experiment id Experiment description Expression energy
                                  Cortical subplate
                                  Expression energy: 0.6
                                  73514713 Antisense, RP_051121_02_H11, Mouse strain C57BL/6J (56 days, male) 0.6

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                                  by the Knut & Alice Wallenberg Foundation.


                                  contact@proteinatlas.org