HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:62.2 nTPM
HPA Brain:68.8 nTPM
GTEx:62.2 nTPM
FANTOM5:64.4 Scaled Tags Per Million
Pig:46.4 nTPM
Mouse:23.5 nTPM
Allen mouse:3.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA014859Antibody HPA063699
Glial cells LowLow
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 68.8
Sample id Sample description nTPM
Hippocampus
nTPM: 62.9
1898 Male, age 80, left hemisphere 75.6
1855 Male, age 76, left hemisphere 69.2
2621 Female, age 67, right hemisphere 60.6
2148 Female, age 91, left hemisphere 60.0
1911 Female, age 85, right hemisphere 57.2
2529 Female, age 94, left hemisphere 55.0
Dentate gyrus
nTPM: 61.0
2010 Male, age 76, both hemispheres 68.1
1927 Female, age 91, both hemispheres 64.2
2528 Male, age 74, both hemispheres 60.7
2246 Female, age 85, both hemispheres 60.2
2530 Female, age 94, left hemisphere 58.1
2531 Female, age 67, both hemispheres 54.7
Entorhinal gyrus
nTPM: 60.5
2764 Male, age 80, right hemisphere 65.4
1787 Male, age 76, left hemisphere 65.1
1938 Female, age 85, left hemisphere 62.3
2117 Female, age 91, right hemisphere 61.1
2613 Female, age 94, left hemisphere 55.9
2686 Male, age 75, right hemisphere 53.4
Hippocampus, CA1
nTPM: 67.2
2749 Male, age 80, left hemisphere 93.1
2045 Male, age 76, both hemispheres 67.6
1873 Female, age 85, both hemispheres 59.9
2527 Male, age 74, both hemispheres 59.2
2082 Female, age 91, right hemisphere 56.3
Hippocampus, CA2
nTPM: 61.8
1892 Male, age 76, both hemispheres 75.9
1963 Male, age 80, left hemisphere 66.9
2249 Male, age 74, both hemispheres 63.0
1940 Female, age 85, left hemisphere 56.9
2113 Female, age 91, right hemisphere 54.5
2437 Female, age 94, left hemisphere 53.8
Hippocampus, CA3
nTPM: 68.8
2436 Male, age 74, both hemispheres 81.4
2137 Male, age 80, left hemisphere 79.5
1867 Male, age 76, both hemispheres 69.2
2620 Female, age 94, left hemisphere 65.3
2861 Female, age 67, both hemispheres 62.1
1891 Female, age 85, both hemispheres 55.0
Parahippocampal cortex
nTPM: 58.7
1850 Male, age 80, both hemispheres 64.7
2692 Male, age 74, both hemispheres 61.7
2245 Female, age 91, both hemispheres 60.8
2622 Female, age 67, right hemisphere 60.2
1990 Female, age 91, right hemisphere 59.0
2018 Male, age 76, both hemispheres 58.3
2532 Female, age 72, left hemisphere 56.9
1933 Female, age 85, both hemispheres 56.7
2250 Female, age 67, right hemisphere 54.9
2693 Female, age 94, both hemispheres 53.2
Perirhinal gyrus
nTPM: 62.0
1847 Female, age 91, left hemisphere 69.1
1794 Male, age 80, right hemisphere 66.6
1841 Female, age 85, right hemisphere 59.8
2848 Male, age 76, right hemisphere 58.0
2521 Female, age 94, right hemisphere 56.6
Subiculum
nTPM: 57.3
1901 Male, age 80, both hemispheres 65.6
2438 Female, age 94, left hemisphere 58.3
1977 Female, age 85, both hemispheres 56.4
2619 Male, age 74, both hemispheres 56.0
2042 Male, age 76, both hemispheres 54.7
2729 Female, age 91, right hemisphere 52.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 62.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 62.2
Samples: 197

Max nTPM: 91.8
Min nTPM: 36.5
Std nTPM: 9.5
Median nTPM: 61.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 91.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 88.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 88.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 85.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 84.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 83.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 81.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 81.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 79.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 78.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 76.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 64.4
FF:10153-102I9 76 years, female 74.8
FF:10169-103B7 60 years, female 54.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 46.4
Pig sample Sample description nTPM
Subiculum
nTPM: 38.4
Samples: 4

Max nTPM: 49.0
Min nTPM: 33.8
Sample A Female 49.0
Sample B Female 35.5
Sample C Male 35.3
Sample D Male 33.8
Dorsal hippocampus
nTPM: 46.5
Samples: 4

Max nTPM: 56.9
Min nTPM: 35.3
Sample A Female 56.9
Sample B Female 46.2
Sample C Male 47.4
Sample D Male 35.3
Entorhinal cortex
nTPM: 36.3
Samples: 4

Max nTPM: 40.9
Min nTPM: 29.8
Sample A Female 40.9
Sample B Female 38.4
Sample C Male 36.0
Sample D Male 29.8
Ventral hippocampus
nTPM: 42.6
Samples: 4

Max nTPM: 51.5
Min nTPM: 28.8
Sample A Female 43.8
Sample B Female 28.8
Sample C Male 51.5
Sample D Male 46.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 23.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.0
Samples: 4

Max nTPM: 24.5
Min nTPM: 19.0
Sample A Male 20.8
Sample B Male 19.7
Sample C Female 19.0
Sample D Female 24.5
Hippocampal formation
nTPM: 23.5
Samples: 4

Max nTPM: 25.7
Min nTPM: 19.6
Sample A Male 19.6
Sample B Male 23.0
Sample C Female 25.7
Sample D Female 25.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.4
671235 Antisense, RP_040914_01_H12, Mouse strain C57BL/6J (56 days, male) 3.4

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