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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
111.1
nTPM
Monaco:
26.6
nTPM
Schmiedel:
26.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
111.1
HPA sample
nTPM
gdT-cell nTPM: 76.4
Samples: 6
Max nTPM: 107.0
Min nTPM: 37.7
P10809_1007
37.7
P10809_1022
66.8
P10809_1041
107.0
P10809_1060
85.3
P10809_1077
74.5
P10809_1098
86.9
MAIT T-cell nTPM: 93.8
Samples: 6
Max nTPM: 118.6
Min nTPM: 43.0
P10809_1006
43.0
P10809_1024
118.6
P10809_1043
100.0
P10809_1062
98.0
P10809_1083
90.1
P10809_1097
113.3
Memory CD4 T-cell nTPM: 95.4
Samples: 6
Max nTPM: 121.1
Min nTPM: 41.9
P10809_1014
41.9
P10809_1026
101.4
P10809_1045
105.6
P10809_1064
113.6
P10809_1086
88.6
P10809_1113
121.1
Memory CD8 T-cell nTPM: 87.6
Samples: 5
Max nTPM: 116.1
Min nTPM: 51.0
P10809_1012
51.0
P10809_1027
80.2
P10809_1046
81.7
P10809_1065
109.1
P10809_1111
116.1
Naive CD4 T-cell nTPM: 99.1
Samples: 6
Max nTPM: 181.3
Min nTPM: 39.5
P10809_1015
39.5
P10809_1030
103.6
P10809_1049
181.3
P10809_1068
79.4
P10809_1085
93.3
P10809_1112
97.5
Naive CD8 T-cell nTPM: 88.4
Samples: 6
Max nTPM: 109.0
Min nTPM: 49.4
P10809_1016
49.4
P10809_1031
105.9
P10809_1050
109.0
P10809_1069
91.8
P10809_1087
67.0
P10809_1110
107.0
T-reg nTPM: 111.1
Samples: 6
Max nTPM: 153.5
Min nTPM: 57.9
P10809_1018
57.9
P10809_1037
79.9
P10809_1056
153.5
P10809_1075
149.5
P10809_1094
115.7
P10809_1106
110.0
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
26.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 19.9
Samples: 4
Max nTPM: 25.2
Min nTPM: 14.7
RHH5202_R3573
23.5
RHH5230_R3602
14.7
RHH5259_R3631
25.2
RHH5288_R3660
16.0
Effector memory CD8 T-cell nTPM: 11.1
Samples: 4
Max nTPM: 15.7
Min nTPM: 7.0
RHH5203_R3574
7.6
RHH5231_R3603
7.0
RHH5260_R3632
15.7
RHH5289_R3661
14.2
MAIT T-cell nTPM: 20.0
Samples: 4
Max nTPM: 22.7
Min nTPM: 17.9
RHH5233_R3605
18.7
RHH5205_R3576
22.7
RHH5262_R3634
17.9
RHH5297_R3663
20.5
Memory CD4 T-cell TFH nTPM: 15.0
Samples: 4
Max nTPM: 19.8
Min nTPM: 10.4
RHH5300_R3666
18.7
RHH5236_R3608
19.8
RHH5265_R3637
10.4
RHH5208_R3579
11.2
Memory CD4 T-cell Th1 nTPM: 17.9
Samples: 4
Max nTPM: 26.0
Min nTPM: 9.5
RHH5210_R3581
9.5
RHH5302_R3668
11.7
RHH5238_R3610
26.0
RHH5267_R3639
24.4
Memory CD4 T-cell Th1/Th17 nTPM: 17.9
Samples: 4
Max nTPM: 31.9
Min nTPM: 10.3
RHH5303_R3669
16.3
RHH5211_R3582
31.9
RHH5239_R3611
10.3
RHH5268_R3640
13.0
Memory CD4 T-cell Th17 nTPM: 13.4
Samples: 4
Max nTPM: 15.6
Min nTPM: 8.8
RHH5304_R3670
15.6
RHH5212_R3583
8.8
RHH5240_R3612
14.7
RHH5269_R3641
14.6
Memory CD4 T-cell Th2 nTPM: 11.5
Samples: 4
Max nTPM: 17.6
Min nTPM: 6.3
RHH5305_R3671
13.7
RHH5213_R3584
6.3
RHH5241_R3613
17.6
RHH5270_R3642
8.5
Naive CD4 T-cell nTPM: 24.3
Samples: 4
Max nTPM: 29.5
Min nTPM: 19.1
RHH5306_R3672
28.2
RHH5214_R3585
29.5
RHH5242_R3614
20.4
RHH5271_R3643
19.1
Naive CD8 T-cell nTPM: 19.6
Samples: 4
Max nTPM: 27.1
Min nTPM: 12.1
RHH5201_R3572
14.0
RHH5229_R3601
12.1
RHH5258_R3630
27.1
RHH5287_R3659
25.0
Non-Vd2 gdTCR nTPM: 14.3
Samples: 4
Max nTPM: 19.8
Min nTPM: 10.4
RHH5235_R3607
10.4
RHH5264_R3636
11.5
RHH5207_R3578
15.6
RHH5299_R3665
19.8
T-reg nTPM: 16.9
Samples: 4
Max nTPM: 31.8
Min nTPM: 7.6
RHH5301_R3667
15.8
RHH5237_R3609
12.4
RHH5266_R3638
7.6
RHH5209_R3580
31.8
Terminal effector memory CD4 T-cell nTPM: 10.8
Samples: 2
Max nTPM: 13.2
Min nTPM: 8.3
RHH5243_R3615
13.2
RHH5272_R3644
8.3
Terminal effector memory CD8 T-cell nTPM: 16.9
Samples: 4
Max nTPM: 23.8
Min nTPM: 13.4
RHH5232_R3604
13.4
RHH5204_R3575
23.8
RHH5261_R3633
14.3
RHH5296_R3662
16.0
Vd2 gdTCR nTPM: 26.6
Samples: 4
Max nTPM: 37.3
Min nTPM: 13.1
RHH5234_R3606
13.1
RHH5206_R3577
37.3
RHH5263_R3635
25.8
RHH5298_R3664
30.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
