HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:159.6 nTPM
HPA Brain:21.0 nTPM
GTEx:159.6 nTPM
FANTOM5:99.0 Scaled Tags Per Million
Pig:92.1 nTPM
Mouse:109.5 nTPM
Allen mouse:18.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001393Antibody CAB007766
Glial cells Not detectedMedium
Neuronal cells Not detectedMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.0
Sample id Sample description nTPM
Hippocampus
nTPM: 4.2
1855 Male, age 76, left hemisphere 17.7
2148 Female, age 91, left hemisphere 3.7
2621 Female, age 67, right hemisphere 1.8
2529 Female, age 94, left hemisphere 1.4
1898 Male, age 80, left hemisphere 0.4
1911 Female, age 85, right hemisphere 0.3
Dentate gyrus
nTPM: 6.8
2010 Male, age 76, both hemispheres 16.4
2246 Female, age 85, both hemispheres 11.1
2528 Male, age 74, both hemispheres 9.5
2531 Female, age 67, both hemispheres 2.2
2530 Female, age 94, left hemisphere 1.1
1927 Female, age 91, both hemispheres 0.7
Entorhinal gyrus
nTPM: 2.8
1787 Male, age 76, left hemisphere 12.2
2613 Female, age 94, left hemisphere 2.8
2686 Male, age 75, right hemisphere 0.6
1938 Female, age 85, left hemisphere 0.5
2117 Female, age 91, right hemisphere 0.4
2764 Male, age 80, right hemisphere 0.4
Hippocampus, CA1
nTPM: 3.4
2045 Male, age 76, both hemispheres 13.6
2527 Male, age 74, both hemispheres 1.3
1873 Female, age 85, both hemispheres 0.9
2749 Male, age 80, left hemisphere 0.7
2082 Female, age 91, right hemisphere 0.4
Hippocampus, CA2
nTPM: 3.5
2113 Female, age 91, right hemisphere 6.0
1940 Female, age 85, left hemisphere 5.4
2437 Female, age 94, left hemisphere 5.2
1892 Male, age 76, both hemispheres 2.2
2249 Male, age 74, both hemispheres 1.6
1963 Male, age 80, left hemisphere 0.8
Hippocampus, CA3
nTPM: 15.9
2436 Male, age 74, both hemispheres 76.5
2137 Male, age 80, left hemisphere 13.9
1867 Male, age 76, both hemispheres 1.9
2861 Female, age 67, both hemispheres 1.4
2620 Female, age 94, left hemisphere 1.1
1891 Female, age 85, both hemispheres 0.5
Parahippocampal cortex
nTPM: 9.8
2245 Female, age 91, both hemispheres 43.9
1850 Male, age 80, both hemispheres 28.5
2018 Male, age 76, both hemispheres 13.3
2532 Female, age 72, left hemisphere 6.2
2693 Female, age 94, both hemispheres 2.0
2250 Female, age 67, right hemisphere 1.3
2692 Male, age 74, both hemispheres 1.2
2622 Female, age 67, right hemisphere 0.7
1990 Female, age 91, right hemisphere 0.6
1933 Female, age 85, both hemispheres 0.3
Perirhinal gyrus
nTPM: 21.0
1841 Female, age 85, right hemisphere 31.5
2521 Female, age 94, right hemisphere 29.0
1847 Female, age 91, left hemisphere 23.1
2848 Male, age 76, right hemisphere 11.9
1794 Male, age 80, right hemisphere 9.7
Subiculum
nTPM: 17.4
2438 Female, age 94, left hemisphere 87.1
2042 Male, age 76, both hemispheres 12.8
2619 Male, age 74, both hemispheres 1.9
2729 Female, age 91, right hemisphere 1.4
1977 Female, age 85, both hemispheres 1.2
1901 Male, age 80, both hemispheres 0.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 159.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 159.6
Samples: 197

Max nTPM: 298.6
Min nTPM: 81.9
Std nTPM: 36.8
Median nTPM: 154.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 298.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 251.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 247.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 239.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 236.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 236.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 231.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 230.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 223.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 223.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 223.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 99.0
FF:10169-103B7 60 years, female 111.1
FF:10153-102I9 76 years, female 86.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 92.1
Pig sample Sample description nTPM
Subiculum
nTPM: 83.6
Samples: 4

Max nTPM: 102.2
Min nTPM: 76.3
Sample A Female 102.2
Sample B Female 76.3
Sample C Male 77.7
Sample D Male 78.0
Dorsal hippocampus
nTPM: 92.1
Samples: 4

Max nTPM: 114.2
Min nTPM: 67.2
Sample A Female 114.2
Sample B Female 92.0
Sample C Male 95.1
Sample D Male 67.2
Entorhinal cortex
nTPM: 88.1
Samples: 4

Max nTPM: 97.1
Min nTPM: 80.8
Sample A Female 92.5
Sample B Female 97.1
Sample C Male 80.8
Sample D Male 82.0
Ventral hippocampus
nTPM: 84.3
Samples: 4

Max nTPM: 106.4
Min nTPM: 58.3
Sample A Female 79.7
Sample B Female 58.3
Sample C Male 106.4
Sample D Male 92.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 109.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 109.5
Samples: 4

Max nTPM: 125.8
Min nTPM: 100.9
Sample A Male 100.9
Sample B Male 125.8
Sample C Female 107.2
Sample D Female 104.2
Hippocampal formation
nTPM: 97.8
Samples: 4

Max nTPM: 120.9
Min nTPM: 86.8
Sample A Male 120.9
Sample B Male 91.3
Sample C Female 86.8
Sample D Female 92.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 18.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.5
72735 Antisense, RP_040407_01_B07, Mouse strain C57BL/6J (56 days, male) 20.6
67752111 Antisense, RP_040922_01_C04, Mouse strain C57BL/6J (56 days, male) 16.5

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