MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.0 nTPM
HPA Brain:0.2 nTPM
GTEx:19.0 nTPM
FANTOM5:35.2 Scaled Tags Per Million
Pig:9.0 nTPM
Mouse:10.1 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 0.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.1
2411 Female, age 72, unknown 0.2
2828 Female, age 72, unknown 0.2
1827 Male, age 72, unknown 0.1
1830 Male, age 51, unknown 0.1
1833 Male, age 53, unknown 0.1
1870 Female, age 42, unknown 0.1
2019 Male, age 18, unknown 0.1
2586 Male, age 75, left hemisphere 0.1
2666 Male, age 74, left hemisphere 0.1
2219 Male, age 76, both hemispheres 0.0
Dorsal raphe nucleus
nTPM: 0.1
1828 Male, age 53, unknown 0.1
2016 Female, age 72, unknown 0.1
2047 Male, age 72, unknown 0.1
2298 Female, age 72, unknown 0.1
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.1
1848 Female, age 42, unknown 0.3
1890 Male, age 53, unknown 0.1
2097 Female, age 72, unknown 0.1
2849 Male, age 72, unknown 0.1
Median raphe nucleus
nTPM: 0.2
2220 Male, age 76, midline 0.2
Periaquaductal grey, anterior
nTPM: 0.1
2502 Female, age 75, unknown 0.2
1795 Male, age 51, unknown 0.1
1947 Male, age 18, unknown 0.1
Periaquaductal grey, dorsal
nTPM: 0.1
2464 Female, age 72, unknown 0.3
1831 Male, age 72, unknown 0.1
1840 Male, age 53, unknown 0.1
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.1
2053 Male, age 18, unknown 0.1
2272 Male, age 74, both hemispheres 0.1
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 0.1
1815 Male, age 53, unknown 0.1
1817 Female, age 42, unknown 0.1
1944 Female, age 72, unknown 0.1
2007 Male, age 72, unknown 0.1
2224 Female, age 72, unknown 0.1
2273 Male, age 74, both hemispheres 0.1
2407 Male, age 75, both hemispheres 0.1
2825 Male, age 18, unknown 0.1
1816 Male, age 51, unknown 0.0
2316 Male, age 76, right hemisphere 0.0
2667 Female, age 75, unknown 0.0
Red nucleus
nTPM: 0.1
2725 Female, age 75, unknown 0.3
1865 Male, age 51, unknown 0.2
1821 Female, age 72, unknown 0.1
1904 Male, age 53, unknown 0.1
1954 Female, age 42, unknown 0.1
2227 Male, age 72, unknown 0.1
2503 Female, age 72, unknown 0.1
2584 Male, age 75, left hemisphere 0.1
2588 Male, age 74, left hemisphere 0.1
2769 Male, age 72, unknown 0.1
2785 Male, age 18, unknown 0.1
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 0.1
1851 Male, age 51, unknown 0.2
2583 Male, age 75, right hemisphere 0.2
2699 Male, age 18, unknown 0.2
1889 Female, age 72, unknown 0.1
1916 Female, age 42, unknown 0.1
1941 Male, age 53, unknown 0.1
2241 Male, age 72, unknown 0.1
2409 Female, age 72, unknown 0.1
2665 Male, age 74, both hemispheres 0.1
2590 Female, age 75, unknown 0.0
Superior colliculus
nTPM: 0.1
1895 Male, age 76, right hemisphere 0.2
2087 Female, age 72, unknown 0.2
1796 Male, age 53, unknown 0.1
1913 Female, age 42, unknown 0.1
1995 Male, age 72, unknown 0.1
2261 Male, age 18, unknown 0.1
2587 Male, age 74, left hemisphere 0.1
2664 Male, age 75, both hemispheres 0.1
1839 Male, age 51, unknown 0.0
2668 Female, age 75, unknown 0.0
Ventral tegmental area
nTPM: 0.1
2218 Male, age 76, both hemispheres 0.2
1915 Female, age 42, unknown 0.1
1942 Male, age 51, unknown 0.1
2021 Male, age 53, unknown 0.1
2223 Female, age 72, unknown 0.1
2410 Female, age 72, unknown 0.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.0
Samples: 139

Max nTPM: 93.0
Min nTPM: 4.2
Std nTPM: 15.0
Median nTPM: 16.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 93.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 89.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 88.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 73.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 67.2
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 54.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 43.8
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 43.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 38.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 37.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 36.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.2
FF:10158-103A5 76 years, female 35.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.6
Samples: 4

Max nTPM: 9.4
Min nTPM: 4.1
Sample A Female 6.2
Sample B Female 9.4
Sample C Male 4.1
Sample D Male 6.6
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.3
Sample A Female 4.3
Sample B Female 2.3
Sample C Male 4.7
Sample D Male 2.8
Periaqueductal gray
nTPM: 2.8
Samples: 3

Max nTPM: 4.0
Min nTPM: 2.0
Sample B Female 2.0
Sample C Male 4.0
Sample D Male 2.5
Superior colliculi
nTPM: 9.1
Samples: 4

Max nTPM: 17.2
Min nTPM: 5.3
Sample A Female 6.2
Sample B Female 17.2
Sample C Male 7.5
Sample D Male 5.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 13.0
Min nTPM: 8.1
Sample A Male 13.0
Sample B Male 9.4
Sample C Female 8.1
Sample D Female 9.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
76135516 Antisense, RP_060518_04_G06, Mouse strain C57BL/6J (56 days, male) 0.8
72008119 Antisense, RP_051017_01_B08, Mouse strain C57BL/6J (56 days, male) 0.2

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