MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA Brain:155.2 nTPM
GTEx:24.1 nTPM
FANTOM5:280.0 Scaled Tags Per Million
Pig:73.5 nTPM
Mouse:38.5 nTPM
Allen mouse:12.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 155.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.1
2828 Female, age 72, unknown 140.4
2586 Male, age 75, left hemisphere 132.6
2666 Male, age 74, left hemisphere 129.7
1870 Female, age 42, unknown 126.2
1827 Male, age 72, unknown 124.4
2411 Female, age 72, unknown 120.8
1830 Male, age 51, unknown 113.8
2219 Male, age 76, both hemispheres 110.6
1833 Male, age 53, unknown 102.5
2019 Male, age 18, unknown 80.1
Dorsal raphe nucleus
nTPM: 126.4
2016 Female, age 72, unknown 147.9
1828 Male, age 53, unknown 137.4
2298 Female, age 72, unknown 132.3
2047 Male, age 72, unknown 125.8
2750 Male, age 76, both hemispheres 88.4
Inferior colliculus
nTPM: 128.2
1890 Male, age 53, unknown 144.7
1848 Female, age 42, unknown 125.8
2097 Female, age 72, unknown 125.3
2849 Male, age 72, unknown 117.1
Median raphe nucleus
nTPM: 82.1
2220 Male, age 76, midline 82.1
Periaquaductal grey, anterior
nTPM: 155.2
1947 Male, age 18, unknown 203.5
2502 Female, age 75, unknown 131.4
1795 Male, age 51, unknown 130.6
Periaquaductal grey, dorsal
nTPM: 116.8
1831 Male, age 72, unknown 123.9
2464 Female, age 72, unknown 121.5
1840 Male, age 53, unknown 120.5
2850 Male, age 76, both hemispheres 101.5
Periaquaductal grey, lateral
nTPM: 127.6
2053 Male, age 18, unknown 147.0
2272 Male, age 74, both hemispheres 123.7
2140 Male, age 76, both hemispheres 112.0
Pretectal area
nTPM: 113.9
2667 Female, age 75, unknown 138.5
2273 Male, age 74, both hemispheres 138.1
2825 Male, age 18, unknown 129.6
2407 Male, age 75, both hemispheres 128.1
1944 Female, age 72, unknown 121.6
2224 Female, age 72, unknown 119.6
1816 Male, age 51, unknown 107.5
1817 Female, age 42, unknown 97.9
2316 Male, age 76, right hemisphere 96.6
1815 Male, age 53, unknown 93.8
2007 Male, age 72, unknown 81.7
Red nucleus
nTPM: 144.5
1954 Female, age 42, unknown 181.2
1821 Female, age 72, unknown 180.0
1865 Male, age 51, unknown 172.7
2227 Male, age 72, unknown 159.7
2769 Male, age 72, unknown 159.6
1904 Male, age 53, unknown 156.7
2503 Female, age 72, unknown 150.1
2725 Female, age 75, unknown 135.4
2823 Male, age 76, right hemisphere 129.8
2584 Male, age 75, left hemisphere 114.5
2588 Male, age 74, left hemisphere 113.9
2785 Male, age 18, unknown 80.5
Substantia nigra
nTPM: 145.0
2699 Male, age 18, unknown 192.2
2665 Male, age 74, both hemispheres 174.1
2583 Male, age 75, right hemisphere 165.9
2590 Female, age 75, unknown 151.0
1916 Female, age 42, unknown 142.3
1851 Male, age 51, unknown 140.0
2409 Female, age 72, unknown 128.8
2241 Male, age 72, unknown 125.7
1941 Male, age 53, unknown 125.6
1889 Female, age 72, unknown 104.8
Superior colliculus
nTPM: 124.2
1995 Male, age 72, unknown 143.5
1913 Female, age 42, unknown 142.4
2587 Male, age 74, left hemisphere 136.7
2261 Male, age 18, unknown 130.1
2664 Male, age 75, both hemispheres 129.9
1796 Male, age 53, unknown 123.1
1839 Male, age 51, unknown 119.8
2087 Female, age 72, unknown 116.0
2668 Female, age 75, unknown 113.9
1895 Male, age 76, right hemisphere 87.2
Ventral tegmental area
nTPM: 125.0
2410 Female, age 72, unknown 142.7
1915 Female, age 42, unknown 134.9
2021 Male, age 53, unknown 134.1
1942 Male, age 51, unknown 132.4
2223 Female, age 72, unknown 108.9
2218 Male, age 76, both hemispheres 96.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.1
Samples: 139

Max nTPM: 67.4
Min nTPM: 8.1
Std nTPM: 7.5
Median nTPM: 23.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 67.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 44.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 39.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 37.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 36.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 35.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 33.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 33.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 33.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 280.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 280.0
FF:10158-103A5 76 years, female 280.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.9
Samples: 4

Max nTPM: 76.8
Min nTPM: 40.3
Sample A Female 76.8
Sample B Female 40.3
Sample C Male 72.2
Sample D Male 50.1
Midbrain
nTPM: 73.5
Samples: 4

Max nTPM: 114.2
Min nTPM: 49.3
Sample A Female 114.2
Sample B Female 49.3
Sample C Male 77.7
Sample D Male 52.9
Periaqueductal gray
nTPM: 56.3
Samples: 3

Max nTPM: 63.7
Min nTPM: 50.9
Sample B Female 54.4
Sample C Male 63.7
Sample D Male 50.9
Superior colliculi
nTPM: 59.1
Samples: 4

Max nTPM: 71.0
Min nTPM: 36.5
Sample A Female 65.9
Sample B Female 36.5
Sample C Male 71.0
Sample D Male 62.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.5
Samples: 4

Max nTPM: 42.9
Min nTPM: 28.7
Sample A Male 28.7
Sample B Male 40.7
Sample C Female 42.9
Sample D Female 41.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.4
69885654 Antisense, RP_050512_03_B01, Mouse strain C57BL/6J (56 days, male) 13.0
74511924 Antisense, RP_060220_03_C03, Mouse strain C57BL/6J (56 days, male) 11.7

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