MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1263.2 nTPM
HPA Brain:424.8 nTPM
GTEx:1263.2 nTPM
FANTOM5:403.2 Scaled Tags Per Million
Pig:3.0 nTPM
Mouse:788.3 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 424.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 338.2
2586 Male, age 75, left hemisphere 384.6
2411 Female, age 72, unknown 380.3
2828 Female, age 72, unknown 353.6
2219 Male, age 76, both hemispheres 351.4
1870 Female, age 42, unknown 347.9
2019 Male, age 18, unknown 344.5
2666 Male, age 74, left hemisphere 336.8
1830 Male, age 51, unknown 306.1
1833 Male, age 53, unknown 298.2
1827 Male, age 72, unknown 279.1
Dorsal raphe nucleus
nTPM: 337.4
2750 Male, age 76, both hemispheres 371.9
2016 Female, age 72, unknown 347.6
2298 Female, age 72, unknown 336.6
1828 Male, age 53, unknown 322.0
2047 Male, age 72, unknown 308.9
Inferior colliculus
nTPM: 313.3
1890 Male, age 53, unknown 351.2
1848 Female, age 42, unknown 304.3
2097 Female, age 72, unknown 300.7
2849 Male, age 72, unknown 297.2
Median raphe nucleus
nTPM: 363.3
2220 Male, age 76, midline 363.3
Periaquaductal grey, anterior
nTPM: 424.8
2502 Female, age 75, unknown 527.6
1795 Male, age 51, unknown 422.1
1947 Male, age 18, unknown 324.7
Periaquaductal grey, dorsal
nTPM: 318.3
2464 Female, age 72, unknown 358.3
1840 Male, age 53, unknown 357.1
2850 Male, age 76, both hemispheres 292.3
1831 Male, age 72, unknown 265.4
Periaquaductal grey, lateral
nTPM: 329.8
2140 Male, age 76, both hemispheres 333.9
2053 Male, age 18, unknown 329.1
2272 Male, age 74, both hemispheres 326.4
Pretectal area
nTPM: 302.4
2007 Male, age 72, unknown 332.5
2273 Male, age 74, both hemispheres 327.6
2316 Male, age 76, right hemisphere 325.3
2825 Male, age 18, unknown 306.9
2224 Female, age 72, unknown 305.2
1815 Male, age 53, unknown 302.8
2407 Male, age 75, both hemispheres 298.8
1817 Female, age 42, unknown 295.0
1816 Male, age 51, unknown 291.7
1944 Female, age 72, unknown 276.4
2667 Female, age 75, unknown 263.9
Red nucleus
nTPM: 372.7
2503 Female, age 72, unknown 521.4
2227 Male, age 72, unknown 450.8
2769 Male, age 72, unknown 417.1
1865 Male, age 51, unknown 406.4
1904 Male, age 53, unknown 379.7
2588 Male, age 74, left hemisphere 362.1
2725 Female, age 75, unknown 356.1
2584 Male, age 75, left hemisphere 353.9
2785 Male, age 18, unknown 346.1
1954 Female, age 42, unknown 304.2
1821 Female, age 72, unknown 301.3
2823 Male, age 76, right hemisphere 273.4
Substantia nigra
nTPM: 411.9
2409 Female, age 72, unknown 532.0
1851 Male, age 51, unknown 521.2
2699 Male, age 18, unknown 499.2
1916 Female, age 42, unknown 473.9
2590 Female, age 75, unknown 382.1
2665 Male, age 74, both hemispheres 378.9
1941 Male, age 53, unknown 348.6
2241 Male, age 72, unknown 347.4
2583 Male, age 75, right hemisphere 321.6
1889 Female, age 72, unknown 314.5
Superior colliculus
nTPM: 341.2
1995 Male, age 72, unknown 416.6
1913 Female, age 42, unknown 410.9
2587 Male, age 74, left hemisphere 402.9
1796 Male, age 53, unknown 365.0
2261 Male, age 18, unknown 355.0
2668 Female, age 75, unknown 329.5
2087 Female, age 72, unknown 327.4
2664 Male, age 75, both hemispheres 306.2
1839 Male, age 51, unknown 296.1
1895 Male, age 76, right hemisphere 202.2
Ventral tegmental area
nTPM: 408.5
1915 Female, age 42, unknown 466.1
2223 Female, age 72, unknown 465.7
2410 Female, age 72, unknown 438.1
2021 Male, age 53, unknown 385.6
1942 Male, age 51, unknown 360.4
2218 Male, age 76, both hemispheres 335.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1263.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1263.2
Samples: 139

Max nTPM: 5097.9
Min nTPM: 378.5
Std nTPM: 545.6
Median nTPM: 1160.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5097.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2860.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2741.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2656.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2656.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1988.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1956.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1940.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1937.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1871.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1870.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 403.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 403.2
FF:10158-103A5 76 years, female 403.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.0
Samples: 4

Max nTPM: 4.5
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 3.0
Sample C Male 3.1
Sample D Male 4.5
Midbrain
nTPM: 1.7
Samples: 4

Max nTPM: 3.6
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 2.1
Sample C Male 0.5
Sample D Male 3.6
Periaqueductal gray
nTPM: 2.3
Samples: 3

Max nTPM: 3.9
Min nTPM: 1.4
Sample B Female 1.6
Sample C Male 1.4
Sample D Male 3.9
Superior colliculi
nTPM: 2.3
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 2.3
Sample C Male 2.0
Sample D Male 3.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 788.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 788.3
Samples: 4

Max nTPM: 1053.4
Min nTPM: 615.0
Sample A Male 1053.4
Sample B Male 699.5
Sample C Female 615.0
Sample D Female 785.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
69818344 Antisense, RP_050510_04_H07, Mouse strain C57BL/6J (56 days, male) 4.0

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