MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.6 nTPM
HPA Brain:73.4 nTPM
GTEx:13.6 nTPM
FANTOM5:404.7 Scaled Tags Per Million
Pig:108.4 nTPM
Mouse:110.5 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.9
2411 Female, age 72, unknown 73.9
1830 Male, age 51, unknown 70.4
1833 Male, age 53, unknown 68.1
1870 Female, age 42, unknown 68.1
2019 Male, age 18, unknown 66.6
2666 Male, age 74, left hemisphere 57.8
2828 Female, age 72, unknown 53.5
1827 Male, age 72, unknown 52.9
2586 Male, age 75, left hemisphere 50.5
2219 Male, age 76, both hemispheres 47.3
Dorsal raphe nucleus
nTPM: 48.4
2750 Male, age 76, both hemispheres 72.6
2016 Female, age 72, unknown 46.4
1828 Male, age 53, unknown 44.5
2047 Male, age 72, unknown 40.8
2298 Female, age 72, unknown 37.6
Inferior colliculus
nTPM: 43.6
1848 Female, age 42, unknown 46.7
1890 Male, age 53, unknown 44.8
2849 Male, age 72, unknown 42.4
2097 Female, age 72, unknown 40.5
Median raphe nucleus
nTPM: 46.6
2220 Male, age 76, midline 46.6
Periaquaductal grey, anterior
nTPM: 54.5
2502 Female, age 75, unknown 64.0
1947 Male, age 18, unknown 57.5
1795 Male, age 51, unknown 42.1
Periaquaductal grey, dorsal
nTPM: 36.3
2464 Female, age 72, unknown 48.9
1831 Male, age 72, unknown 38.4
2850 Male, age 76, both hemispheres 29.7
1840 Male, age 53, unknown 28.1
Periaquaductal grey, lateral
nTPM: 37.9
2272 Male, age 74, both hemispheres 44.4
2053 Male, age 18, unknown 43.5
2140 Male, age 76, both hemispheres 25.7
Pretectal area
nTPM: 49.2
1815 Male, age 53, unknown 63.8
2407 Male, age 75, both hemispheres 59.4
2007 Male, age 72, unknown 58.6
1817 Female, age 42, unknown 53.6
2316 Male, age 76, right hemisphere 51.8
1944 Female, age 72, unknown 48.6
2825 Male, age 18, unknown 46.4
1816 Male, age 51, unknown 46.1
2273 Male, age 74, both hemispheres 39.8
2224 Female, age 72, unknown 37.2
2667 Female, age 75, unknown 36.0
Red nucleus
nTPM: 73.4
1865 Male, age 51, unknown 91.2
2503 Female, age 72, unknown 85.9
1904 Male, age 53, unknown 85.0
1821 Female, age 72, unknown 84.4
2785 Male, age 18, unknown 71.9
1954 Female, age 42, unknown 71.4
2588 Male, age 74, left hemisphere 70.5
2823 Male, age 76, right hemisphere 68.9
2769 Male, age 72, unknown 67.4
2227 Male, age 72, unknown 66.4
2725 Female, age 75, unknown 61.7
2584 Male, age 75, left hemisphere 56.9
Substantia nigra
nTPM: 55.7
2409 Female, age 72, unknown 84.3
2583 Male, age 75, right hemisphere 69.5
1851 Male, age 51, unknown 59.7
2241 Male, age 72, unknown 57.0
1889 Female, age 72, unknown 56.2
2590 Female, age 75, unknown 55.5
1941 Male, age 53, unknown 52.7
1916 Female, age 42, unknown 44.3
2699 Male, age 18, unknown 43.9
2665 Male, age 74, both hemispheres 34.2
Superior colliculus
nTPM: 57.3
2668 Female, age 75, unknown 73.2
1913 Female, age 42, unknown 68.2
1995 Male, age 72, unknown 65.2
2587 Male, age 74, left hemisphere 63.7
1895 Male, age 76, right hemisphere 60.7
1839 Male, age 51, unknown 53.2
2261 Male, age 18, unknown 52.6
1796 Male, age 53, unknown 49.0
2087 Female, age 72, unknown 46.4
2664 Male, age 75, both hemispheres 40.4
Ventral tegmental area
nTPM: 49.9
2410 Female, age 72, unknown 66.2
2223 Female, age 72, unknown 51.3
1915 Female, age 42, unknown 48.4
2218 Male, age 76, both hemispheres 47.2
1942 Male, age 51, unknown 43.3
2021 Male, age 53, unknown 43.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.6
Samples: 139

Max nTPM: 48.5
Min nTPM: 0.0
Std nTPM: 9.4
Median nTPM: 10.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 48.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 47.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 43.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 43.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 36.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 33.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 31.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 30.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 29.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 29.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 27.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 404.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 404.7
FF:10158-103A5 76 years, female 404.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 108.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 108.4
Samples: 4

Max nTPM: 152.4
Min nTPM: 79.8
Sample A Female 102.9
Sample B Female 79.8
Sample C Male 98.3
Sample D Male 152.4
Midbrain
nTPM: 104.7
Samples: 4

Max nTPM: 132.4
Min nTPM: 85.5
Sample A Female 104.2
Sample B Female 132.4
Sample C Male 96.8
Sample D Male 85.5
Periaqueductal gray
nTPM: 86.5
Samples: 3

Max nTPM: 105.5
Min nTPM: 65.6
Sample B Female 105.5
Sample C Male 65.6
Sample D Male 88.5
Superior colliculi
nTPM: 94.3
Samples: 4

Max nTPM: 118.0
Min nTPM: 52.4
Sample A Female 94.8
Sample B Female 52.4
Sample C Male 118.0
Sample D Male 111.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 110.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 110.6
Samples: 4

Max nTPM: 117.9
Min nTPM: 95.9
Sample A Male 95.9
Sample B Male 116.0
Sample C Female 117.9
Sample D Female 112.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
69407827 Antisense, RP_050414_02_D12, Mouse strain C57BL/6J (56 days, male) 7.9
72128755 Antisense, RP_051017_04_C11, Mouse strain C57BL/6J (56 days, male) 5.0

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