HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		88.880
RNA expressioni
Consensus:34.9 nTPM
HPA Brain:17.4 nTPM
GTEx:34.9 nTPM
FANTOM5:25.3 Scaled Tags Per Million
Mouse:61.3 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA026585Antibody HPA027167
Glial cells Not detectedNot detected
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA030793
Hippocampal formation mean intensity 88.880
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 40.189
Molecular layer of the dentate gyrus 19.629
Granular dentate gyrus 44.789
CA1 - oriens layer 23.321
CA1 - pyramidal layer 33.503
CA1 - radiatum layer 25.754
CA2 - oriens layer 29.926
CA2 - pyramidal layer 41.404
CA2 - radiatum layer 39.434
CA3 - oriens layer 13.487
CA3 - pyramidal layer 39.366
CA3 - radiatum layer 33.190
Stratum lucidum 33.398
Lacunosum moleculare 14.433
Subiculum 76.262

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.4
Sample id Sample description nTPM
Hippocampus
nTPM: 16.9
1898 Male, age 80, left hemisphere 21.9
2529 Female, age 94, left hemisphere 17.2
1911 Female, age 85, right hemisphere 16.3
2621 Female, age 67, right hemisphere 16.1
2148 Female, age 91, left hemisphere 15.1
1855 Male, age 76, left hemisphere 14.9
Dentate gyrus
nTPM: 15.4
2530 Female, age 94, left hemisphere 18.8
2010 Male, age 76, both hemispheres 16.5
1927 Female, age 91, both hemispheres 16.1
2246 Female, age 85, both hemispheres 14.5
2531 Female, age 67, both hemispheres 13.4
2528 Male, age 74, both hemispheres 13.0
Entorhinal gyrus
nTPM: 16.9
2686 Male, age 75, right hemisphere 19.5
2117 Female, age 91, right hemisphere 18.4
1938 Female, age 85, left hemisphere 17.9
1787 Male, age 76, left hemisphere 17.1
2764 Male, age 80, right hemisphere 16.7
2613 Female, age 94, left hemisphere 11.6
Hippocampus, CA1
nTPM: 17.4
2749 Male, age 80, left hemisphere 19.5
1873 Female, age 85, both hemispheres 18.8
2045 Male, age 76, both hemispheres 17.7
2082 Female, age 91, right hemisphere 15.5
2527 Male, age 74, both hemispheres 15.3
Hippocampus, CA2
nTPM: 15.7
1892 Male, age 76, both hemispheres 20.5
1963 Male, age 80, left hemisphere 18.6
2113 Female, age 91, right hemisphere 16.5
2249 Male, age 74, both hemispheres 14.8
2437 Female, age 94, left hemisphere 12.7
1940 Female, age 85, left hemisphere 11.1
Hippocampus, CA3
nTPM: 14.7
1867 Male, age 76, both hemispheres 18.4
1891 Female, age 85, both hemispheres 18.2
2137 Male, age 80, left hemisphere 16.9
2436 Male, age 74, both hemispheres 14.2
2861 Female, age 67, both hemispheres 11.4
2620 Female, age 94, left hemisphere 9.0
Parahippocampal cortex
nTPM: 14.8
1850 Male, age 80, both hemispheres 21.4
2018 Male, age 76, both hemispheres 17.4
1990 Female, age 91, right hemisphere 17.1
2692 Male, age 74, both hemispheres 14.9
2693 Female, age 94, both hemispheres 14.3
2532 Female, age 72, left hemisphere 14.0
1933 Female, age 85, both hemispheres 13.7
2245 Female, age 91, both hemispheres 12.9
2622 Female, age 67, right hemisphere 11.6
2250 Female, age 67, right hemisphere 10.9
Perirhinal gyrus
nTPM: 16.6
1794 Male, age 80, right hemisphere 20.1
1847 Female, age 91, left hemisphere 17.5
1841 Female, age 85, right hemisphere 17.2
2848 Male, age 76, right hemisphere 16.2
2521 Female, age 94, right hemisphere 12.1
Subiculum
nTPM: 16.0
1901 Male, age 80, both hemispheres 19.1
1977 Female, age 85, both hemispheres 18.6
2438 Female, age 94, left hemisphere 17.8
2042 Male, age 76, both hemispheres 14.9
2729 Female, age 91, right hemisphere 13.7
2619 Male, age 74, both hemispheres 12.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.9
Samples: 197

Max nTPM: 66.6
Min nTPM: 21.4
Std nTPM: 8.3
Median nTPM: 33.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 66.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 62.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 57.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 57.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 56.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 56.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 55.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 55.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 54.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 53.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 53.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.3
FF:10169-103B7 60 years, female 29.0
FF:10153-102I9 76 years, female 21.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 61.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 57.8
Samples: 4

Max nTPM: 58.9
Min nTPM: 56.0
Sample A Male 57.3
Sample B Male 56.0
Sample C Female 58.9
Sample D Female 58.9
Hippocampal formation
nTPM: 61.3
Samples: 4

Max nTPM: 63.6
Min nTPM: 59.8
Sample A Male 63.6
Sample B Male 59.8
Sample C Female 60.3
Sample D Female 61.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
80473485 Antisense, RP_070219_01_E11, Mouse strain C57BL/6J (56 days, male) 0.2

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