MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:201.4 nTPM
HPA Brain:151.1 nTPM
GTEx:201.4 nTPM
FANTOM5:253.7 Scaled Tags Per Million
Pig:116.0 nTPM
Mouse:160.2 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 151.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.0
2411 Female, age 72, unknown 158.5
2828 Female, age 72, unknown 142.2
1870 Female, age 42, unknown 127.0
1833 Male, age 53, unknown 113.5
2019 Male, age 18, unknown 103.1
2219 Male, age 76, both hemispheres 102.7
1830 Male, age 51, unknown 97.3
1827 Male, age 72, unknown 96.5
2666 Male, age 74, left hemisphere 85.2
2586 Male, age 75, left hemisphere 83.7
Dorsal raphe nucleus
nTPM: 151.1
2298 Female, age 72, unknown 183.6
2047 Male, age 72, unknown 152.7
2750 Male, age 76, both hemispheres 146.5
2016 Female, age 72, unknown 138.8
1828 Male, age 53, unknown 133.9
Inferior colliculus
nTPM: 121.0
2097 Female, age 72, unknown 144.4
1890 Male, age 53, unknown 126.3
1848 Female, age 42, unknown 120.0
2849 Male, age 72, unknown 93.1
Median raphe nucleus
nTPM: 118.4
2220 Male, age 76, midline 118.4
Periaquaductal grey, anterior
nTPM: 93.6
1947 Male, age 18, unknown 101.8
1795 Male, age 51, unknown 94.1
2502 Female, age 75, unknown 85.0
Periaquaductal grey, dorsal
nTPM: 109.7
2464 Female, age 72, unknown 136.1
1840 Male, age 53, unknown 110.5
2850 Male, age 76, both hemispheres 101.2
1831 Male, age 72, unknown 91.0
Periaquaductal grey, lateral
nTPM: 103.1
2053 Male, age 18, unknown 112.8
2272 Male, age 74, both hemispheres 102.3
2140 Male, age 76, both hemispheres 94.3
Pretectal area
nTPM: 106.7
2667 Female, age 75, unknown 132.0
1817 Female, age 42, unknown 124.3
2224 Female, age 72, unknown 121.1
2273 Male, age 74, both hemispheres 114.9
1944 Female, age 72, unknown 114.7
1815 Male, age 53, unknown 113.1
2825 Male, age 18, unknown 106.6
1816 Male, age 51, unknown 97.0
2316 Male, age 76, right hemisphere 96.4
2007 Male, age 72, unknown 88.4
2407 Male, age 75, both hemispheres 65.0
Red nucleus
nTPM: 129.9
1821 Female, age 72, unknown 166.3
2503 Female, age 72, unknown 160.6
1954 Female, age 42, unknown 148.3
2769 Male, age 72, unknown 140.5
1904 Male, age 53, unknown 139.7
2227 Male, age 72, unknown 137.8
2823 Male, age 76, right hemisphere 134.5
1865 Male, age 51, unknown 133.8
2725 Female, age 75, unknown 127.1
2785 Male, age 18, unknown 97.4
2588 Male, age 74, left hemisphere 94.3
2584 Male, age 75, left hemisphere 79.1
Substantia nigra
nTPM: 132.2
2241 Male, age 72, unknown 167.4
2699 Male, age 18, unknown 155.0
1916 Female, age 42, unknown 153.1
1851 Male, age 51, unknown 147.0
2409 Female, age 72, unknown 141.3
1889 Female, age 72, unknown 126.7
1941 Male, age 53, unknown 117.5
2665 Male, age 74, both hemispheres 112.3
2590 Female, age 75, unknown 111.7
2583 Male, age 75, right hemisphere 90.0
Superior colliculus
nTPM: 100.7
1995 Male, age 72, unknown 128.9
1913 Female, age 42, unknown 117.7
2087 Female, age 72, unknown 116.8
2668 Female, age 75, unknown 100.6
2587 Male, age 74, left hemisphere 99.1
1796 Male, age 53, unknown 99.0
1839 Male, age 51, unknown 97.6
1895 Male, age 76, right hemisphere 94.0
2261 Male, age 18, unknown 94.0
2664 Male, age 75, both hemispheres 59.4
Ventral tegmental area
nTPM: 129.0
2410 Female, age 72, unknown 149.3
1942 Male, age 51, unknown 131.4
1915 Female, age 42, unknown 130.2
2223 Female, age 72, unknown 125.4
2021 Male, age 53, unknown 119.9
2218 Male, age 76, both hemispheres 117.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 201.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 201.4
Samples: 139

Max nTPM: 446.8
Min nTPM: 58.3
Std nTPM: 73.0
Median nTPM: 189.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 446.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 405.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 399.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 389.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 364.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 357.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 356.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 354.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 349.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 325.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 324.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 253.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 253.7
FF:10158-103A5 76 years, female 253.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 116.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 114.5
Samples: 4

Max nTPM: 125.6
Min nTPM: 105.6
Sample A Female 125.6
Sample B Female 109.4
Sample C Male 105.6
Sample D Male 117.5
Midbrain
nTPM: 116.0
Samples: 4

Max nTPM: 156.9
Min nTPM: 82.5
Sample A Female 156.9
Sample B Female 127.5
Sample C Male 97.1
Sample D Male 82.5
Periaqueductal gray
nTPM: 102.8
Samples: 3

Max nTPM: 119.4
Min nTPM: 90.2
Sample B Female 119.4
Sample C Male 98.9
Sample D Male 90.2
Superior colliculi
nTPM: 100.6
Samples: 4

Max nTPM: 114.6
Min nTPM: 88.8
Sample A Female 114.6
Sample B Female 88.8
Sample C Male 105.6
Sample D Male 93.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 160.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.2
Samples: 4

Max nTPM: 165.4
Min nTPM: 150.2
Sample A Male 165.4
Sample B Male 162.1
Sample C Female 150.2
Sample D Female 163.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
76115729 Antisense, RP_060620_02_B08, Mouse strain C57BL/6J (56 days, male) 1.5
71381040 Antisense, RP_050503_01_F02, Mouse strain C57BL/6J (56 days, male) 1.3

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