MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.1 nTPM
HPA Brain:30.0 nTPM
GTEx:31.1 nTPM
FANTOM5:30.0 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:33.6 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.8
2586 Male, age 75, left hemisphere 36.4
2666 Male, age 74, left hemisphere 33.3
2411 Female, age 72, unknown 32.4
2019 Male, age 18, unknown 31.7
2828 Female, age 72, unknown 28.0
1870 Female, age 42, unknown 27.3
1827 Male, age 72, unknown 26.2
1830 Male, age 51, unknown 25.3
1833 Male, age 53, unknown 24.0
2219 Male, age 76, both hemispheres 23.8
Dorsal raphe nucleus
nTPM: 28.4
2047 Male, age 72, unknown 31.4
2298 Female, age 72, unknown 31.0
2750 Male, age 76, both hemispheres 29.7
1828 Male, age 53, unknown 28.0
2016 Female, age 72, unknown 22.1
Inferior colliculus
nTPM: 23.0
2097 Female, age 72, unknown 25.3
1890 Male, age 53, unknown 23.6
1848 Female, age 42, unknown 22.9
2849 Male, age 72, unknown 20.2
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Periaquaductal grey, anterior
nTPM: 28.1
1795 Male, age 51, unknown 28.6
2502 Female, age 75, unknown 28.5
1947 Male, age 18, unknown 27.2
Periaquaductal grey, dorsal
nTPM: 22.9
1831 Male, age 72, unknown 25.9
2464 Female, age 72, unknown 23.4
1840 Male, age 53, unknown 23.0
2850 Male, age 76, both hemispheres 19.2
Periaquaductal grey, lateral
nTPM: 21.7
2053 Male, age 18, unknown 24.0
2140 Male, age 76, both hemispheres 21.0
2272 Male, age 74, both hemispheres 20.0
Pretectal area
nTPM: 26.9
2007 Male, age 72, unknown 33.6
1817 Female, age 42, unknown 30.4
1816 Male, age 51, unknown 29.2
1815 Male, age 53, unknown 28.6
1944 Female, age 72, unknown 28.6
2667 Female, age 75, unknown 27.1
2407 Male, age 75, both hemispheres 26.3
2224 Female, age 72, unknown 24.6
2825 Male, age 18, unknown 24.4
2316 Male, age 76, right hemisphere 22.3
2273 Male, age 74, both hemispheres 21.2
Red nucleus
nTPM: 27.8
2588 Male, age 74, left hemisphere 30.6
2584 Male, age 75, left hemisphere 30.4
1821 Female, age 72, unknown 29.1
1904 Male, age 53, unknown 28.6
1954 Female, age 42, unknown 27.8
2785 Male, age 18, unknown 27.4
2227 Male, age 72, unknown 27.3
2503 Female, age 72, unknown 26.7
2725 Female, age 75, unknown 26.5
2823 Male, age 76, right hemisphere 26.3
2769 Male, age 72, unknown 26.2
1865 Male, age 51, unknown 25.9
Substantia nigra
nTPM: 30.0
1916 Female, age 42, unknown 39.1
1851 Male, age 51, unknown 35.6
1941 Male, age 53, unknown 31.9
2583 Male, age 75, right hemisphere 30.8
2665 Male, age 74, both hemispheres 29.9
1889 Female, age 72, unknown 28.4
2699 Male, age 18, unknown 27.3
2241 Male, age 72, unknown 27.1
2590 Female, age 75, unknown 25.7
2409 Female, age 72, unknown 24.6
Superior colliculus
nTPM: 26.0
2668 Female, age 75, unknown 30.5
1796 Male, age 53, unknown 28.4
2664 Male, age 75, both hemispheres 27.7
2261 Male, age 18, unknown 26.2
2587 Male, age 74, left hemisphere 26.2
2087 Female, age 72, unknown 25.8
1839 Male, age 51, unknown 24.9
1913 Female, age 42, unknown 24.3
1995 Male, age 72, unknown 23.6
1895 Male, age 76, right hemisphere 22.4
Ventral tegmental area
nTPM: 29.7
2410 Female, age 72, unknown 34.8
1915 Female, age 42, unknown 31.4
2218 Male, age 76, both hemispheres 30.0
2223 Female, age 72, unknown 28.0
1942 Male, age 51, unknown 27.8
2021 Male, age 53, unknown 26.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.1
Samples: 139

Max nTPM: 46.4
Min nTPM: 20.0
Std nTPM: 5.5
Median nTPM: 30.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 46.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 43.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 42.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 42.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 42.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 42.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 40.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 40.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 39.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 39.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 39.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.0
FF:10158-103A5 76 years, female 30.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.6
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.1
Sample A Female 16.1
Sample B Female 12.9
Sample C Male 17.3
Sample D Male 12.1
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 17.5
Min nTPM: 11.3
Sample A Female 14.7
Sample B Female 11.3
Sample C Male 17.5
Sample D Male 16.2
Periaqueductal gray
nTPM: 12.2
Samples: 3

Max nTPM: 14.4
Min nTPM: 10.8
Sample B Female 11.3
Sample C Male 14.4
Sample D Male 10.8
Superior colliculi
nTPM: 16.7
Samples: 4

Max nTPM: 19.0
Min nTPM: 14.3
Sample A Female 16.9
Sample B Female 14.3
Sample C Male 19.0
Sample D Male 16.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 35.3
Min nTPM: 31.4
Sample A Male 31.4
Sample B Male 34.0
Sample C Female 35.3
Sample D Female 33.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
73584783 Antisense, RP_051206_01_B07, Mouse strain C57BL/6J (56 days, male) 2.4

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