MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.2 nTPM
HPA Brain:172.4 nTPM
GTEx:53.2 nTPM
FANTOM5:236.5 Scaled Tags Per Million
Pig:155.6 nTPM
Mouse:441.9 nTPM
Allen mouse:25.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 172.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.3
1827 Male, age 72, unknown 163.8
2019 Male, age 18, unknown 144.7
2411 Female, age 72, unknown 144.7
2219 Male, age 76, both hemispheres 140.1
1870 Female, age 42, unknown 137.9
1833 Male, age 53, unknown 120.2
2666 Male, age 74, left hemisphere 116.6
1830 Male, age 51, unknown 113.5
2828 Female, age 72, unknown 110.2
2586 Male, age 75, left hemisphere 81.2
Dorsal raphe nucleus
nTPM: 137.8
2298 Female, age 72, unknown 180.5
2750 Male, age 76, both hemispheres 147.5
2047 Male, age 72, unknown 134.5
1828 Male, age 53, unknown 115.1
2016 Female, age 72, unknown 111.2
Inferior colliculus
nTPM: 156.3
2097 Female, age 72, unknown 195.3
1848 Female, age 42, unknown 157.0
2849 Male, age 72, unknown 143.5
1890 Male, age 53, unknown 129.3
Median raphe nucleus
nTPM: 172.4
2220 Male, age 76, midline 172.4
Periaquaductal grey, anterior
nTPM: 137.2
1947 Male, age 18, unknown 161.7
1795 Male, age 51, unknown 131.7
2502 Female, age 75, unknown 118.4
Periaquaductal grey, dorsal
nTPM: 139.1
1840 Male, age 53, unknown 160.4
2850 Male, age 76, both hemispheres 138.5
2464 Female, age 72, unknown 129.6
1831 Male, age 72, unknown 128.1
Periaquaductal grey, lateral
nTPM: 128.3
2272 Male, age 74, both hemispheres 142.0
2140 Male, age 76, both hemispheres 122.2
2053 Male, age 18, unknown 120.7
Pretectal area
nTPM: 168.0
1816 Male, age 51, unknown 210.2
1944 Female, age 72, unknown 207.3
2007 Male, age 72, unknown 199.8
1817 Female, age 42, unknown 199.3
1815 Male, age 53, unknown 178.1
2224 Female, age 72, unknown 174.9
2667 Female, age 75, unknown 165.2
2273 Male, age 74, both hemispheres 140.8
2825 Male, age 18, unknown 129.3
2316 Male, age 76, right hemisphere 123.4
2407 Male, age 75, both hemispheres 119.5
Red nucleus
nTPM: 114.3
2725 Female, age 75, unknown 155.7
1821 Female, age 72, unknown 135.0
2785 Male, age 18, unknown 131.8
2823 Male, age 76, right hemisphere 115.8
1954 Female, age 42, unknown 113.4
2503 Female, age 72, unknown 111.3
1904 Male, age 53, unknown 107.7
1865 Male, age 51, unknown 106.4
2588 Male, age 74, left hemisphere 104.5
2227 Male, age 72, unknown 98.2
2769 Male, age 72, unknown 98.0
2584 Male, age 75, left hemisphere 93.7
Substantia nigra
nTPM: 146.4
1889 Female, age 72, unknown 191.2
1941 Male, age 53, unknown 180.5
2241 Male, age 72, unknown 175.9
1916 Female, age 42, unknown 174.2
2409 Female, age 72, unknown 165.8
1851 Male, age 51, unknown 141.0
2590 Female, age 75, unknown 124.9
2583 Male, age 75, right hemisphere 106.5
2665 Male, age 74, both hemispheres 104.3
2699 Male, age 18, unknown 100.0
Superior colliculus
nTPM: 136.3
2087 Female, age 72, unknown 180.7
1895 Male, age 76, right hemisphere 164.8
2261 Male, age 18, unknown 159.8
1796 Male, age 53, unknown 156.3
1839 Male, age 51, unknown 132.7
2587 Male, age 74, left hemisphere 130.0
2668 Female, age 75, unknown 126.4
1913 Female, age 42, unknown 123.8
1995 Male, age 72, unknown 105.8
2664 Male, age 75, both hemispheres 82.7
Ventral tegmental area
nTPM: 141.1
2218 Male, age 76, both hemispheres 161.5
2410 Female, age 72, unknown 159.0
1915 Female, age 42, unknown 146.0
1942 Male, age 51, unknown 134.7
2223 Female, age 72, unknown 129.3
2021 Male, age 53, unknown 115.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.2
Samples: 139

Max nTPM: 195.9
Min nTPM: 15.3
Std nTPM: 30.6
Median nTPM: 45.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 195.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 159.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 145.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 144.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 131.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 116.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 112.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 106.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 103.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 102.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 101.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 236.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 236.5
FF:10158-103A5 76 years, female 236.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 155.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 122.0
Samples: 4

Max nTPM: 170.9
Min nTPM: 57.8
Sample A Female 170.9
Sample B Female 101.3
Sample C Male 158.0
Sample D Male 57.8
Midbrain
nTPM: 155.6
Samples: 4

Max nTPM: 211.4
Min nTPM: 68.5
Sample A Female 68.5
Sample B Female 133.7
Sample C Male 208.6
Sample D Male 211.4
Periaqueductal gray
nTPM: 140.7
Samples: 3

Max nTPM: 167.6
Min nTPM: 122.1
Sample B Female 122.1
Sample C Male 167.6
Sample D Male 132.3
Superior colliculi
nTPM: 155.6
Samples: 4

Max nTPM: 191.1
Min nTPM: 97.0
Sample A Female 166.3
Sample B Female 97.0
Sample C Male 191.1
Sample D Male 168.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 441.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 441.9
Samples: 4

Max nTPM: 473.7
Min nTPM: 383.3
Sample A Male 383.3
Sample B Male 473.7
Sample C Female 470.3
Sample D Female 440.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 25.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.0
70431259 Antisense, RP_050614_02_E02, Mouse strain C57BL/6J (56 days, male) 25.0

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