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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
121.5
nTPM
Monaco:
315.2
nTPM
Schmiedel:
396.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
121.5
HPA sample
nTPM
gdT-cell nTPM: 121.5
Samples: 6
Max nTPM: 151.1
Min nTPM: 102.8
P10809_1007
102.8
P10809_1022
151.1
P10809_1041
119.7
P10809_1060
128.3
P10809_1077
110.3
P10809_1098
116.8
MAIT T-cell nTPM: 107.5
Samples: 6
Max nTPM: 135.3
Min nTPM: 96.8
P10809_1006
102.3
P10809_1024
135.3
P10809_1043
106.8
P10809_1062
106.5
P10809_1083
96.8
P10809_1097
97.1
Memory CD4 T-cell nTPM: 71.8
Samples: 6
Max nTPM: 103.4
Min nTPM: 54.3
P10809_1014
54.3
P10809_1026
74.8
P10809_1045
70.8
P10809_1064
71.4
P10809_1086
103.4
P10809_1113
56.0
Memory CD8 T-cell nTPM: 101.2
Samples: 5
Max nTPM: 113.8
Min nTPM: 82.7
P10809_1012
82.7
P10809_1027
103.8
P10809_1046
113.8
P10809_1065
104.4
P10809_1111
101.2
Naive CD4 T-cell nTPM: 68.3
Samples: 6
Max nTPM: 79.8
Min nTPM: 54.2
P10809_1015
62.2
P10809_1030
79.8
P10809_1049
70.7
P10809_1068
54.2
P10809_1085
77.7
P10809_1112
65.1
Naive CD8 T-cell nTPM: 96.1
Samples: 6
Max nTPM: 124.6
Min nTPM: 67.7
P10809_1016
67.7
P10809_1031
93.0
P10809_1050
101.7
P10809_1069
107.7
P10809_1087
124.6
P10809_1110
81.9
T-reg nTPM: 28.2
Samples: 6
Max nTPM: 40.3
Min nTPM: 20.6
P10809_1018
20.6
P10809_1037
31.4
P10809_1056
20.9
P10809_1075
24.9
P10809_1094
40.3
P10809_1106
30.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
315.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 178.7
Samples: 4
Max nTPM: 204.0
Min nTPM: 150.4
RHH5202_R3573
158.4
RHH5230_R3602
204.0
RHH5259_R3631
202.0
RHH5288_R3660
150.4
Effector memory CD8 T-cell nTPM: 276.3
Samples: 4
Max nTPM: 325.4
Min nTPM: 220.7
RHH5203_R3574
220.7
RHH5231_R3603
269.1
RHH5260_R3632
290.1
RHH5289_R3661
325.4
MAIT T-cell nTPM: 282.6
Samples: 4
Max nTPM: 312.3
Min nTPM: 266.2
RHH5233_R3605
266.2
RHH5205_R3576
276.9
RHH5262_R3634
312.3
RHH5297_R3663
275.1
Memory CD4 T-cell TFH nTPM: 73.4
Samples: 4
Max nTPM: 92.5
Min nTPM: 52.5
RHH5300_R3666
52.5
RHH5236_R3608
87.1
RHH5265_R3637
92.5
RHH5208_R3579
61.6
Memory CD4 T-cell Th1 nTPM: 152.4
Samples: 4
Max nTPM: 207.1
Min nTPM: 115.8
RHH5210_R3581
127.3
RHH5302_R3668
115.8
RHH5238_R3610
207.1
RHH5267_R3639
159.5
Memory CD4 T-cell Th1/Th17 nTPM: 207.9
Samples: 4
Max nTPM: 232.1
Min nTPM: 175.5
RHH5303_R3669
195.2
RHH5211_R3582
175.5
RHH5239_R3611
232.1
RHH5268_R3640
228.9
Memory CD4 T-cell Th17 nTPM: 151.5
Samples: 4
Max nTPM: 183.2
Min nTPM: 112.6
RHH5304_R3670
183.2
RHH5212_R3583
149.5
RHH5240_R3612
112.6
RHH5269_R3641
160.6
Memory CD4 T-cell Th2 nTPM: 110.6
Samples: 4
Max nTPM: 146.1
Min nTPM: 76.8
RHH5305_R3671
76.8
RHH5213_R3584
146.1
RHH5241_R3613
97.0
RHH5270_R3642
122.3
Naive CD4 T-cell nTPM: 118.1
Samples: 4
Max nTPM: 142.9
Min nTPM: 104.1
RHH5306_R3672
112.7
RHH5214_R3585
104.1
RHH5242_R3614
112.6
RHH5271_R3643
142.9
Naive CD8 T-cell nTPM: 184.2
Samples: 4
Max nTPM: 194.7
Min nTPM: 170.7
RHH5201_R3572
170.7
RHH5229_R3601
194.7
RHH5258_R3630
193.5
RHH5287_R3659
177.8
Non-Vd2 gdTCR nTPM: 233.7
Samples: 4
Max nTPM: 277.9
Min nTPM: 205.1
RHH5235_R3607
277.9
RHH5264_R3636
241.1
RHH5207_R3578
210.8
RHH5299_R3665
205.1
T-reg nTPM: 86.5
Samples: 4
Max nTPM: 104.5
Min nTPM: 67.5
RHH5301_R3667
67.5
RHH5237_R3609
79.6
RHH5266_R3638
104.5
RHH5209_R3580
94.4
Terminal effector memory CD4 T-cell nTPM: 315.2
Samples: 2
Max nTPM: 370.0
Min nTPM: 260.3
RHH5243_R3615
370.0
RHH5272_R3644
260.3
Terminal effector memory CD8 T-cell nTPM: 264.6
Samples: 4
Max nTPM: 291.0
Min nTPM: 234.8
RHH5232_R3604
286.9
RHH5204_R3575
234.8
RHH5261_R3633
291.0
RHH5296_R3662
245.7
Vd2 gdTCR nTPM: 301.7
Samples: 4
Max nTPM: 365.1
Min nTPM: 220.0
RHH5234_R3606
362.3
RHH5206_R3577
259.4
RHH5263_R3635
365.1
RHH5298_R3664
220.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
