MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.2 nTPM
HPA Brain:56.6 nTPM
GTEx:62.2 nTPM
FANTOM5:86.9 Scaled Tags Per Million
Pig:34.8 nTPM
Mouse:127.5 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.3
1827 Male, age 72, unknown 48.5
1870 Female, age 42, unknown 44.8
2219 Male, age 76, both hemispheres 44.0
2019 Male, age 18, unknown 42.3
1833 Male, age 53, unknown 41.5
2411 Female, age 72, unknown 41.3
2666 Male, age 74, left hemisphere 39.7
1830 Male, age 51, unknown 38.1
2828 Female, age 72, unknown 35.8
2586 Male, age 75, left hemisphere 26.9
Dorsal raphe nucleus
nTPM: 43.5
2298 Female, age 72, unknown 48.2
2750 Male, age 76, both hemispheres 46.6
1828 Male, age 53, unknown 42.5
2016 Female, age 72, unknown 40.2
2047 Male, age 72, unknown 40.1
Inferior colliculus
nTPM: 43.7
2849 Male, age 72, unknown 48.4
2097 Female, age 72, unknown 45.5
1848 Female, age 42, unknown 40.5
1890 Male, age 53, unknown 40.5
Median raphe nucleus
nTPM: 56.6
2220 Male, age 76, midline 56.6
Periaquaductal grey, anterior
nTPM: 41.7
1947 Male, age 18, unknown 43.2
1795 Male, age 51, unknown 42.3
2502 Female, age 75, unknown 39.7
Periaquaductal grey, dorsal
nTPM: 48.7
2850 Male, age 76, both hemispheres 59.0
1840 Male, age 53, unknown 48.4
1831 Male, age 72, unknown 44.5
2464 Female, age 72, unknown 42.8
Periaquaductal grey, lateral
nTPM: 46.0
2272 Male, age 74, both hemispheres 52.0
2140 Male, age 76, both hemispheres 45.5
2053 Male, age 18, unknown 40.6
Pretectal area
nTPM: 49.1
1816 Male, age 51, unknown 55.8
1944 Female, age 72, unknown 55.8
1817 Female, age 42, unknown 54.6
1815 Male, age 53, unknown 52.1
2007 Male, age 72, unknown 51.5
2273 Male, age 74, both hemispheres 51.0
2224 Female, age 72, unknown 50.1
2667 Female, age 75, unknown 46.3
2825 Male, age 18, unknown 43.6
2407 Male, age 75, both hemispheres 40.1
2316 Male, age 76, right hemisphere 39.6
Red nucleus
nTPM: 39.3
2725 Female, age 75, unknown 50.6
1821 Female, age 72, unknown 43.5
2823 Male, age 76, right hemisphere 43.1
1954 Female, age 42, unknown 40.4
2503 Female, age 72, unknown 40.2
2785 Male, age 18, unknown 39.0
2227 Male, age 72, unknown 36.7
1865 Male, age 51, unknown 36.5
2584 Male, age 75, left hemisphere 36.1
1904 Male, age 53, unknown 35.6
2769 Male, age 72, unknown 35.1
2588 Male, age 74, left hemisphere 34.4
Substantia nigra
nTPM: 43.2
1941 Male, age 53, unknown 50.6
1889 Female, age 72, unknown 49.6
1916 Female, age 42, unknown 48.8
2241 Male, age 72, unknown 48.3
2699 Male, age 18, unknown 44.9
1851 Male, age 51, unknown 41.4
2665 Male, age 74, both hemispheres 40.8
2409 Female, age 72, unknown 37.4
2590 Female, age 75, unknown 36.8
2583 Male, age 75, right hemisphere 32.8
Superior colliculus
nTPM: 41.9
2087 Female, age 72, unknown 46.4
2261 Male, age 18, unknown 45.7
1895 Male, age 76, right hemisphere 45.4
2587 Male, age 74, left hemisphere 43.9
1839 Male, age 51, unknown 41.4
2668 Female, age 75, unknown 41.4
1913 Female, age 42, unknown 40.6
1796 Male, age 53, unknown 40.0
2664 Male, age 75, both hemispheres 38.0
1995 Male, age 72, unknown 35.9
Ventral tegmental area
nTPM: 42.1
2218 Male, age 76, both hemispheres 48.6
1942 Male, age 51, unknown 42.1
1915 Female, age 42, unknown 42.0
2223 Female, age 72, unknown 40.2
2021 Male, age 53, unknown 39.9
2410 Female, age 72, unknown 39.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.2
Samples: 139

Max nTPM: 97.1
Min nTPM: 42.3
Std nTPM: 9.0
Median nTPM: 60.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 97.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 92.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 87.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 86.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 84.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 80.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 79.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 76.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 76.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 75.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 75.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.9
FF:10158-103A5 76 years, female 86.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.7
Samples: 4

Max nTPM: 35.6
Min nTPM: 31.4
Sample A Female 32.0
Sample B Female 31.4
Sample C Male 35.6
Sample D Male 31.6
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 35.3
Min nTPM: 31.7
Sample A Female 35.3
Sample B Female 34.5
Sample C Male 31.7
Sample D Male 34.0
Periaqueductal gray
nTPM: 34.8
Samples: 3

Max nTPM: 37.1
Min nTPM: 30.9
Sample B Female 30.9
Sample C Male 36.4
Sample D Male 37.1
Superior colliculi
nTPM: 31.9
Samples: 4

Max nTPM: 33.0
Min nTPM: 29.0
Sample A Female 32.7
Sample B Female 29.0
Sample C Male 32.8
Sample D Male 33.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 127.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 127.5
Samples: 4

Max nTPM: 129.8
Min nTPM: 123.9
Sample A Male 123.9
Sample B Male 127.5
Sample C Female 129.8
Sample D Female 128.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
70429459 Antisense, RP_050614_01_F12, Mouse strain C57BL/6J (56 days, male) 5.1
75081397 Antisense, RP_060315_03_C08, Mouse strain C57BL/6J (56 days, male) 3.9

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