MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.4 nTPM
HPA Brain:57.7 nTPM
GTEx:13.4 nTPM
FANTOM5:13.3 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:18.7 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.7
2219 Male, age 76, both hemispheres 74.8
2019 Male, age 18, unknown 56.7
2666 Male, age 74, left hemisphere 49.4
2828 Female, age 72, unknown 48.3
1830 Male, age 51, unknown 46.6
1833 Male, age 53, unknown 45.9
2411 Female, age 72, unknown 45.2
1870 Female, age 42, unknown 41.3
2586 Male, age 75, left hemisphere 41.2
1827 Male, age 72, unknown 38.3
Dorsal raphe nucleus
nTPM: 39.7
2016 Female, age 72, unknown 44.3
2298 Female, age 72, unknown 39.3
2750 Male, age 76, both hemispheres 39.1
1828 Male, age 53, unknown 38.4
2047 Male, age 72, unknown 37.2
Inferior colliculus
nTPM: 39.9
2097 Female, age 72, unknown 44.8
1890 Male, age 53, unknown 42.2
2849 Male, age 72, unknown 36.8
1848 Female, age 42, unknown 35.9
Median raphe nucleus
nTPM: 37.7
2220 Male, age 76, midline 37.7
Periaquaductal grey, anterior
nTPM: 41.0
2502 Female, age 75, unknown 45.6
1947 Male, age 18, unknown 39.3
1795 Male, age 51, unknown 38.0
Periaquaductal grey, dorsal
nTPM: 38.8
2850 Male, age 76, both hemispheres 39.9
2464 Female, age 72, unknown 39.8
1840 Male, age 53, unknown 38.2
1831 Male, age 72, unknown 37.5
Periaquaductal grey, lateral
nTPM: 39.3
2053 Male, age 18, unknown 42.7
2272 Male, age 74, both hemispheres 39.4
2140 Male, age 76, both hemispheres 35.8
Pretectal area
nTPM: 42.4
2667 Female, age 75, unknown 53.2
1815 Male, age 53, unknown 46.3
2007 Male, age 72, unknown 42.8
1944 Female, age 72, unknown 42.5
2407 Male, age 75, both hemispheres 42.3
2273 Male, age 74, both hemispheres 41.9
1816 Male, age 51, unknown 41.7
1817 Female, age 42, unknown 40.6
2316 Male, age 76, right hemisphere 38.8
2825 Male, age 18, unknown 38.3
2224 Female, age 72, unknown 37.9
Red nucleus
nTPM: 49.2
1865 Male, age 51, unknown 58.9
2785 Male, age 18, unknown 53.7
1904 Male, age 53, unknown 53.3
1821 Female, age 72, unknown 52.0
2503 Female, age 72, unknown 51.3
2588 Male, age 74, left hemisphere 49.8
2769 Male, age 72, unknown 48.8
2227 Male, age 72, unknown 48.3
2584 Male, age 75, left hemisphere 46.5
1954 Female, age 42, unknown 45.7
2823 Male, age 76, right hemisphere 43.8
2725 Female, age 75, unknown 38.8
Substantia nigra
nTPM: 57.7
2409 Female, age 72, unknown 76.0
1916 Female, age 42, unknown 72.4
2241 Male, age 72, unknown 68.3
1851 Male, age 51, unknown 66.1
1941 Male, age 53, unknown 53.2
2699 Male, age 18, unknown 52.7
2665 Male, age 74, both hemispheres 52.5
2583 Male, age 75, right hemisphere 49.3
1889 Female, age 72, unknown 47.0
2590 Female, age 75, unknown 39.9
Superior colliculus
nTPM: 46.7
2668 Female, age 75, unknown 58.8
1995 Male, age 72, unknown 57.1
1913 Female, age 42, unknown 53.4
2664 Male, age 75, both hemispheres 46.5
2087 Female, age 72, unknown 45.6
1796 Male, age 53, unknown 44.5
2587 Male, age 74, left hemisphere 44.0
2261 Male, age 18, unknown 40.2
1895 Male, age 76, right hemisphere 39.9
1839 Male, age 51, unknown 37.2
Ventral tegmental area
nTPM: 50.1
1915 Female, age 42, unknown 57.4
2410 Female, age 72, unknown 50.3
2223 Female, age 72, unknown 50.1
1942 Male, age 51, unknown 49.6
2021 Male, age 53, unknown 47.9
2218 Male, age 76, both hemispheres 45.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.4
Samples: 139

Max nTPM: 25.3
Min nTPM: 5.5
Std nTPM: 3.1
Median nTPM: 13.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 25.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 25.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 20.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 19.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 19.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 19.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 19.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 18.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 18.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 18.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 17.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.3
FF:10158-103A5 76 years, female 13.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.5
Samples: 4

Max nTPM: 32.4
Min nTPM: 25.2
Sample A Female 29.4
Sample B Female 26.9
Sample C Male 25.2
Sample D Male 32.4
Midbrain
nTPM: 28.4
Samples: 4

Max nTPM: 39.3
Min nTPM: 19.2
Sample A Female 39.3
Sample B Female 31.9
Sample C Male 19.2
Sample D Male 23.2
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 25.5
Min nTPM: 19.6
Sample B Female 25.5
Sample C Male 19.6
Sample D Male 23.1
Superior colliculi
nTPM: 24.3
Samples: 4

Max nTPM: 26.6
Min nTPM: 21.1
Sample A Female 26.6
Sample B Female 21.1
Sample C Male 23.0
Sample D Male 26.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 19.5
Min nTPM: 17.8
Sample A Male 19.5
Sample B Male 19.1
Sample C Female 18.3
Sample D Female 17.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70743878 Antisense, RP_050725_01_H04, Mouse strain C57BL/6J (56 days, male) 1.7
686198 Antisense, RP_040916_01_A06, Mouse strain C57BL/6J (56 days, male) 0.2

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