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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
80.4
nTPM
Monaco:
123.9
nTPM
Schmiedel:
64.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
80.4
HPA sample
nTPM
gdT-cell nTPM: 2.2
Samples: 6
Max nTPM: 4.7
Min nTPM: 0.1
P10809_1007
0.4
P10809_1022
3.8
P10809_1041
4.7
P10809_1060
2.2
P10809_1077
0.1
P10809_1098
1.9
MAIT T-cell nTPM: 3.2
Samples: 6
Max nTPM: 5.2
Min nTPM: 1.2
P10809_1006
1.2
P10809_1024
5.2
P10809_1043
2.4
P10809_1062
3.0
P10809_1083
3.8
P10809_1097
3.8
Memory CD4 T-cell nTPM: 54.6
Samples: 6
Max nTPM: 97.9
Min nTPM: 22.8
P10809_1014
41.4
P10809_1026
74.5
P10809_1045
54.4
P10809_1064
36.3
P10809_1086
22.8
P10809_1113
97.9
Memory CD8 T-cell nTPM: 4.9
Samples: 5
Max nTPM: 8.1
Min nTPM: 1.9
P10809_1012
7.2
P10809_1027
2.9
P10809_1046
4.2
P10809_1065
1.9
P10809_1111
8.1
Naive CD4 T-cell nTPM: 80.4
Samples: 6
Max nTPM: 102.1
Min nTPM: 53.7
P10809_1015
64.3
P10809_1030
78.5
P10809_1049
88.0
P10809_1068
95.8
P10809_1085
53.7
P10809_1112
102.1
Naive CD8 T-cell nTPM: 17.9
Samples: 6
Max nTPM: 32.2
Min nTPM: 1.7
P10809_1016
14.6
P10809_1031
32.2
P10809_1050
13.6
P10809_1069
18.4
P10809_1087
1.7
P10809_1110
26.8
T-reg nTPM: 5.3
Samples: 6
Max nTPM: 14.0
Min nTPM: 2.0
P10809_1018
4.3
P10809_1037
14.0
P10809_1056
4.2
P10809_1075
2.0
P10809_1094
3.3
P10809_1106
4.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
123.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 19.4
Samples: 4
Max nTPM: 22.5
Min nTPM: 14.8
RHH5202_R3573
21.5
RHH5230_R3602
18.7
RHH5259_R3631
22.5
RHH5288_R3660
14.8
Effector memory CD8 T-cell nTPM: 5.6
Samples: 4
Max nTPM: 8.3
Min nTPM: 2.2
RHH5203_R3574
2.2
RHH5231_R3603
6.2
RHH5260_R3632
5.6
RHH5289_R3661
8.3
MAIT T-cell nTPM: 4.5
Samples: 4
Max nTPM: 7.7
Min nTPM: 0.0
RHH5233_R3605
3.4
RHH5205_R3576
0.0
RHH5262_R3634
7.7
RHH5297_R3663
6.9
Memory CD4 T-cell TFH nTPM: 56.2
Samples: 4
Max nTPM: 91.1
Min nTPM: 27.0
RHH5300_R3666
27.0
RHH5236_R3608
91.1
RHH5265_R3637
48.0
RHH5208_R3579
58.8
Memory CD4 T-cell Th1 nTPM: 58.4
Samples: 4
Max nTPM: 76.0
Min nTPM: 40.9
RHH5210_R3581
76.0
RHH5302_R3668
40.9
RHH5238_R3610
61.2
RHH5267_R3639
55.3
Memory CD4 T-cell Th1/Th17 nTPM: 50.0
Samples: 4
Max nTPM: 77.0
Min nTPM: 23.7
RHH5303_R3669
23.7
RHH5211_R3582
35.9
RHH5239_R3611
77.0
RHH5268_R3640
63.3
Memory CD4 T-cell Th17 nTPM: 69.9
Samples: 4
Max nTPM: 129.8
Min nTPM: 36.6
RHH5304_R3670
36.6
RHH5212_R3583
50.4
RHH5240_R3612
129.8
RHH5269_R3641
62.8
Memory CD4 T-cell Th2 nTPM: 123.9
Samples: 4
Max nTPM: 177.7
Min nTPM: 84.2
RHH5305_R3671
84.2
RHH5213_R3584
107.2
RHH5241_R3613
177.7
RHH5270_R3642
126.3
Naive CD4 T-cell nTPM: 98.0
Samples: 4
Max nTPM: 123.4
Min nTPM: 71.9
RHH5306_R3672
71.9
RHH5214_R3585
102.9
RHH5242_R3614
123.4
RHH5271_R3643
93.6
Naive CD8 T-cell nTPM: 46.7
Samples: 4
Max nTPM: 65.5
Min nTPM: 31.7
RHH5201_R3572
31.7
RHH5229_R3601
65.5
RHH5258_R3630
46.5
RHH5287_R3659
43.2
Non-Vd2 gdTCR nTPM: 3.8
Samples: 4
Max nTPM: 6.1
Min nTPM: 1.1
RHH5235_R3607
6.1
RHH5264_R3636
5.8
RHH5207_R3578
1.1
RHH5299_R3665
2.2
T-reg nTPM: 43.9
Samples: 4
Max nTPM: 69.1
Min nTPM: 21.2
RHH5301_R3667
21.2
RHH5237_R3609
69.1
RHH5266_R3638
45.2
RHH5209_R3580
39.9
Terminal effector memory CD4 T-cell nTPM: 11.8
Samples: 2
Max nTPM: 20.3
Min nTPM: 3.3
RHH5243_R3615
3.3
RHH5272_R3644
20.3
Terminal effector memory CD8 T-cell nTPM: 2.8
Samples: 4
Max nTPM: 5.1
Min nTPM: 1.2
RHH5232_R3604
1.2
RHH5204_R3575
3.7
RHH5261_R3633
5.1
RHH5296_R3662
1.3
Vd2 gdTCR nTPM: 8.0
Samples: 4
Max nTPM: 13.1
Min nTPM: 2.0
RHH5234_R3606
10.3
RHH5206_R3577
2.0
RHH5263_R3635
13.1
RHH5298_R3664
6.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
