MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.0 nTPM
HPA Brain:26.7 nTPM
GTEx:55.0 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:56.2 nTPM
Mouse:94.6 nTPM
Allen mouse:8.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.5
2586 Male, age 75, left hemisphere 26.3
2219 Male, age 76, both hemispheres 25.7
1870 Female, age 42, unknown 23.1
2828 Female, age 72, unknown 22.9
1827 Male, age 72, unknown 22.3
2019 Male, age 18, unknown 22.2
2411 Female, age 72, unknown 21.5
2666 Male, age 74, left hemisphere 20.9
1830 Male, age 51, unknown 20.7
1833 Male, age 53, unknown 19.9
Dorsal raphe nucleus
nTPM: 19.4
2750 Male, age 76, both hemispheres 23.7
2298 Female, age 72, unknown 19.9
1828 Male, age 53, unknown 19.1
2047 Male, age 72, unknown 17.4
2016 Female, age 72, unknown 16.8
Inferior colliculus
nTPM: 18.1
1848 Female, age 42, unknown 19.0
1890 Male, age 53, unknown 18.5
2849 Male, age 72, unknown 18.0
2097 Female, age 72, unknown 17.0
Median raphe nucleus
nTPM: 18.2
2220 Male, age 76, midline 18.2
Periaquaductal grey, anterior
nTPM: 23.4
1947 Male, age 18, unknown 25.0
1795 Male, age 51, unknown 22.8
2502 Female, age 75, unknown 22.3
Periaquaductal grey, dorsal
nTPM: 15.2
2464 Female, age 72, unknown 16.1
1840 Male, age 53, unknown 15.3
1831 Male, age 72, unknown 15.2
2850 Male, age 76, both hemispheres 14.1
Periaquaductal grey, lateral
nTPM: 17.2
2272 Male, age 74, both hemispheres 19.5
2053 Male, age 18, unknown 18.5
2140 Male, age 76, both hemispheres 13.5
Pretectal area
nTPM: 20.0
2007 Male, age 72, unknown 24.0
2667 Female, age 75, unknown 22.8
1816 Male, age 51, unknown 22.0
1944 Female, age 72, unknown 21.8
1817 Female, age 42, unknown 20.5
1815 Male, age 53, unknown 20.0
2825 Male, age 18, unknown 19.6
2273 Male, age 74, both hemispheres 18.9
2407 Male, age 75, both hemispheres 17.7
2224 Female, age 72, unknown 17.3
2316 Male, age 76, right hemisphere 15.2
Red nucleus
nTPM: 23.1
1821 Female, age 72, unknown 26.2
1865 Male, age 51, unknown 24.8
2823 Male, age 76, right hemisphere 24.3
1954 Female, age 42, unknown 23.2
2769 Male, age 72, unknown 23.2
1904 Male, age 53, unknown 23.0
2584 Male, age 75, left hemisphere 23.0
2227 Male, age 72, unknown 22.8
2588 Male, age 74, left hemisphere 22.6
2503 Female, age 72, unknown 21.9
2785 Male, age 18, unknown 21.1
2725 Female, age 75, unknown 20.6
Substantia nigra
nTPM: 26.7
1916 Female, age 42, unknown 34.8
1941 Male, age 53, unknown 33.3
1851 Male, age 51, unknown 30.4
2241 Male, age 72, unknown 26.4
2699 Male, age 18, unknown 26.4
2665 Male, age 74, both hemispheres 25.4
2583 Male, age 75, right hemisphere 24.3
2590 Female, age 75, unknown 22.6
1889 Female, age 72, unknown 22.5
2409 Female, age 72, unknown 21.0
Superior colliculus
nTPM: 21.0
2668 Female, age 75, unknown 24.8
1796 Male, age 53, unknown 24.0
2587 Male, age 74, left hemisphere 22.6
2664 Male, age 75, both hemispheres 21.6
1913 Female, age 42, unknown 20.0
2261 Male, age 18, unknown 20.0
2087 Female, age 72, unknown 19.7
1839 Male, age 51, unknown 19.5
1995 Male, age 72, unknown 19.3
1895 Male, age 76, right hemisphere 18.7
Ventral tegmental area
nTPM: 24.9
2410 Female, age 72, unknown 28.0
2218 Male, age 76, both hemispheres 27.3
1915 Female, age 42, unknown 27.1
2223 Female, age 72, unknown 26.9
1942 Male, age 51, unknown 21.3
2021 Male, age 53, unknown 18.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.0
Samples: 139

Max nTPM: 124.9
Min nTPM: 31.4
Std nTPM: 13.0
Median nTPM: 52.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 124.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 102.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 93.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 76.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 75.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 75.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 74.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 74.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 74.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 73.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 73.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.9
FF:10158-103A5 76 years, female 36.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.0
Samples: 4

Max nTPM: 67.9
Min nTPM: 43.8
Sample A Female 67.9
Sample B Female 43.8
Sample C Male 53.7
Sample D Male 46.6
Midbrain
nTPM: 56.2
Samples: 4

Max nTPM: 74.2
Min nTPM: 49.1
Sample A Female 74.2
Sample B Female 51.5
Sample C Male 50.1
Sample D Male 49.1
Periaqueductal gray
nTPM: 43.4
Samples: 3

Max nTPM: 47.7
Min nTPM: 40.4
Sample B Female 42.1
Sample C Male 47.7
Sample D Male 40.4
Superior colliculi
nTPM: 54.9
Samples: 4

Max nTPM: 69.0
Min nTPM: 43.0
Sample A Female 69.0
Sample B Female 43.0
Sample C Male 53.7
Sample D Male 53.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 94.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.6
Samples: 4

Max nTPM: 102.5
Min nTPM: 91.5
Sample A Male 91.7
Sample B Male 91.5
Sample C Female 92.7
Sample D Female 102.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
68443345 Antisense, RP_050111_01_G11, Mouse strain C57BL/6J (56 days, male) 8.8

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