MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.2 nTPM
HPA Brain:50.9 nTPM
GTEx:46.2 nTPM
FANTOM5:105.4 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:61.7 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.5
2411 Female, age 72, unknown 57.8
1870 Female, age 42, unknown 57.1
2019 Male, age 18, unknown 56.7
1830 Male, age 51, unknown 48.4
1833 Male, age 53, unknown 43.7
2219 Male, age 76, both hemispheres 38.7
2828 Female, age 72, unknown 37.9
1827 Male, age 72, unknown 35.4
2666 Male, age 74, left hemisphere 32.1
2586 Male, age 75, left hemisphere 26.9
Dorsal raphe nucleus
nTPM: 43.3
2750 Male, age 76, both hemispheres 62.8
2298 Female, age 72, unknown 41.8
2016 Female, age 72, unknown 39.1
1828 Male, age 53, unknown 38.0
2047 Male, age 72, unknown 35.1
Inferior colliculus
nTPM: 36.5
2097 Female, age 72, unknown 40.8
1890 Male, age 53, unknown 37.4
1848 Female, age 42, unknown 36.2
2849 Male, age 72, unknown 31.5
Median raphe nucleus
nTPM: 49.3
2220 Male, age 76, midline 49.3
Periaquaductal grey, anterior
nTPM: 36.4
2502 Female, age 75, unknown 42.9
1947 Male, age 18, unknown 35.9
1795 Male, age 51, unknown 30.4
Periaquaductal grey, dorsal
nTPM: 32.6
2464 Female, age 72, unknown 36.3
1831 Male, age 72, unknown 32.0
1840 Male, age 53, unknown 31.7
2850 Male, age 76, both hemispheres 30.6
Periaquaductal grey, lateral
nTPM: 35.5
2272 Male, age 74, both hemispheres 44.0
2053 Male, age 18, unknown 35.0
2140 Male, age 76, both hemispheres 27.6
Pretectal area
nTPM: 39.0
2273 Male, age 74, both hemispheres 49.9
2007 Male, age 72, unknown 44.5
1817 Female, age 42, unknown 44.1
1815 Male, age 53, unknown 44.0
2224 Female, age 72, unknown 38.9
2667 Female, age 75, unknown 38.1
2316 Male, age 76, right hemisphere 35.8
2825 Male, age 18, unknown 35.7
2407 Male, age 75, both hemispheres 33.3
1816 Male, age 51, unknown 32.8
1944 Female, age 72, unknown 32.4
Red nucleus
nTPM: 50.9
1821 Female, age 72, unknown 65.8
1865 Male, age 51, unknown 63.1
1904 Male, age 53, unknown 57.8
2227 Male, age 72, unknown 54.3
2785 Male, age 18, unknown 52.8
2769 Male, age 72, unknown 51.9
1954 Female, age 42, unknown 51.8
2823 Male, age 76, right hemisphere 50.7
2503 Female, age 72, unknown 49.3
2725 Female, age 75, unknown 39.9
2588 Male, age 74, left hemisphere 38.6
2584 Male, age 75, left hemisphere 34.6
Substantia nigra
nTPM: 41.0
1851 Male, age 51, unknown 47.0
1889 Female, age 72, unknown 44.9
2241 Male, age 72, unknown 43.1
2409 Female, age 72, unknown 43.0
2590 Female, age 75, unknown 42.9
1916 Female, age 42, unknown 41.1
2583 Male, age 75, right hemisphere 40.6
1941 Male, age 53, unknown 38.4
2699 Male, age 18, unknown 36.5
2665 Male, age 74, both hemispheres 32.2
Superior colliculus
nTPM: 38.9
1913 Female, age 42, unknown 51.6
2587 Male, age 74, left hemisphere 50.8
1995 Male, age 72, unknown 46.9
1895 Male, age 76, right hemisphere 40.9
2668 Female, age 75, unknown 38.7
1839 Male, age 51, unknown 36.0
1796 Male, age 53, unknown 33.9
2087 Female, age 72, unknown 32.4
2261 Male, age 18, unknown 32.4
2664 Male, age 75, both hemispheres 25.2
Ventral tegmental area
nTPM: 47.3
2223 Female, age 72, unknown 65.8
2410 Female, age 72, unknown 50.7
2021 Male, age 53, unknown 45.3
1942 Male, age 51, unknown 41.1
2218 Male, age 76, both hemispheres 40.6
1915 Female, age 42, unknown 40.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.2
Samples: 139

Max nTPM: 110.0
Min nTPM: 24.1
Std nTPM: 16.0
Median nTPM: 42.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 110.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 107.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 97.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 96.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 89.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 89.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 85.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 80.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 78.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 76.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 72.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.4
FF:10158-103A5 76 years, female 105.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.0
Samples: 4

Max nTPM: 34.8
Min nTPM: 25.3
Sample A Female 34.8
Sample B Female 25.3
Sample C Male 34.1
Sample D Male 33.6
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 50.2
Min nTPM: 27.9
Sample A Female 50.2
Sample B Female 28.9
Sample C Male 27.9
Sample D Male 28.4
Periaqueductal gray
nTPM: 25.4
Samples: 3

Max nTPM: 26.8
Min nTPM: 23.1
Sample B Female 26.8
Sample C Male 26.4
Sample D Male 23.1
Superior colliculi
nTPM: 29.7
Samples: 4

Max nTPM: 32.0
Min nTPM: 26.4
Sample A Female 32.0
Sample B Female 26.4
Sample C Male 31.8
Sample D Male 28.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.8
Samples: 4

Max nTPM: 62.8
Min nTPM: 59.6
Sample A Male 62.6
Sample B Male 59.6
Sample C Female 62.0
Sample D Female 62.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
71280658 Antisense, RP_050818_01_C09, Mouse strain C57BL/6J (56 days, male) 1.5

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