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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
883.2
nTPM
GTEx:
883.2
nTPM
FANTOM5:
116.7
Scaled Tags Per Million
Pig:
998.3
nTPM
Mouse:
125.9
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA045118
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
883.2
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 883.2
Samples: 105
Max nTPM: 1401.4
Min nTPM: 516.6
Std nTPM: 179.6
Median nTPM: 0.0
139_1
64 years, female
1401.4
35_1
74 years, female
1337.3
4_1
88 years, female
1296.9
153_1
70 years, female
1256.8
375_1
74 years, female
1218.1
145_1
84 years, male
1202.9
6_1
73 years, female
1156.2
162_1
79 years, female
1153.4
386_1
76 years, male
1146.8
322_1
76 years, male
1139.0
319_1
81 years, male
1125.7
119_1
70 years, female
1123.3
43_1
64 years, female
1120.6
379_1
60 years, male
1110.7
490_1
67 years, female
1095.5
18_1
88 years, male
1075.4
396_1
62 years, male
1073.7
109_1
81 years, female
1055.3
350_1
84 years, female
1039.6
89_1
63 years, male
1025.7
466_1
57 years, female
1025.5
246_1
77 years, male
998.1
149_1
88 years, male
986.4
120_1
70 years, female
984.5
321_1
62 years, female
977.3
311_1
78 years, male
976.5
447_1
81 years, male
974.8
389_1
86 years, female
974.0
99_1
64 years, male
973.6
468_1
89 years, male
964.8
17_1
71 years, male
960.7
229_1
69 years, female
958.7
243_1
75 years, male
944.6
377_1
82 years, female
944.3
501_1
88 years, male
941.5
414_1
84 years, female
939.7
2_1
77 years, female
939.3
315_1
62 years, female
939.0
405_1
91 years, male
936.0
347_1
72 years, male
932.7
413_1
59 years, female
922.3
117_1
61 years, male
916.7
316_1
62 years, male
916.4
406_1
79 years, male
914.2
173_1
67 years, male
907.8
81_1
67 years, male
907.7
324_1
76 years, male
904.0
142_1
61 years, female
898.5
335_1
73 years, female
898.4
9_1
66 years, female
886.0
318_1
68 years, male
882.0
265_1
87 years, male
881.0
415_1
77 years, female
870.9
217_1
76 years, male
857.4
491_1
89 years, female
856.3
348_1
84 years, male
856.0
254_1
77 years, female
854.8
404_1
82 years, female
853.8
384_1
83 years, male
852.8
518_1
75 years, female
846.9
355_1
70 years, female
846.0
320_1
89 years, female
843.9
349_1
83 years, male
838.0
351_1
91 years, male
837.0
266_1
85 years, male
835.9
313_1
79 years, female
828.7
137_1
83 years, male
827.0
425_1
59 years, female
817.9
480_1
63 years, male
817.6
126_1
63 years, male
817.1
218_1
71 years, female
813.1
292_1
71 years, male
810.2
526_1
61 years, male
808.2
177_1
74 years, male
807.6
115_1
83 years, male
807.3
352_1
62 years, male
806.9
237_1
82 years, male
782.7
517_1
88 years, male
767.7
495_1
57 years, female
759.9
41_1
94 years, female
753.2
251_1
78 years, male
751.8
163_1
78 years, male
746.9
499_1
55 years, female
740.6
356_1
87 years, female
740.1
189_1
76 years, male
740.0
32_1
67 years, male
727.5
503_1
68 years, male
707.5
264_1
73 years, female
700.8
295_1
61 years, female
687.6
293_1
68 years, female
679.4
354_1
81 years, female
674.8
452_1
88 years, female
673.9
307_1
66 years, female
662.2
286_1
68 years, female
661.1
394_1
75 years, female
655.4
291_1
76 years, male
655.0
353_1
82 years, female
649.2
317_1
60 years, male
646.7
42_1
85 years, male
626.1
376_1
75 years, female
582.0
172_1
72 years, female
560.8
288_1
66 years, female
542.4
314_1
67 years, male
542.0
506_1
65 years, male
526.5
308_1
70 years, female
516.6
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.