MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.0 nTPM
HPA Brain:77.8 nTPM
GTEx:24.0 nTPM
FANTOM5:6.5 Scaled Tags Per Million
Pig:179.3 nTPM
Mouse:199.0 nTPM
Allen mouse:21.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.5
2666 Male, age 74, left hemisphere 88.1
2219 Male, age 76, both hemispheres 79.9
1827 Male, age 72, unknown 75.0
2411 Female, age 72, unknown 63.6
2586 Male, age 75, left hemisphere 60.9
2019 Male, age 18, unknown 60.8
2828 Female, age 72, unknown 59.6
1870 Female, age 42, unknown 47.9
1833 Male, age 53, unknown 47.4
1830 Male, age 51, unknown 41.8
Dorsal raphe nucleus
nTPM: 62.2
2298 Female, age 72, unknown 89.1
2047 Male, age 72, unknown 65.3
1828 Male, age 53, unknown 57.5
2750 Male, age 76, both hemispheres 56.8
2016 Female, age 72, unknown 42.2
Inferior colliculus
nTPM: 54.9
2097 Female, age 72, unknown 68.8
1848 Female, age 42, unknown 53.3
2849 Male, age 72, unknown 49.8
1890 Male, age 53, unknown 47.8
Median raphe nucleus
nTPM: 77.8
2220 Male, age 76, midline 77.8
Periaquaductal grey, anterior
nTPM: 74.9
1795 Male, age 51, unknown 87.7
1947 Male, age 18, unknown 72.0
2502 Female, age 75, unknown 65.0
Periaquaductal grey, dorsal
nTPM: 55.3
1840 Male, age 53, unknown 63.2
1831 Male, age 72, unknown 52.9
2850 Male, age 76, both hemispheres 52.8
2464 Female, age 72, unknown 52.5
Periaquaductal grey, lateral
nTPM: 51.2
2140 Male, age 76, both hemispheres 54.5
2053 Male, age 18, unknown 51.8
2272 Male, age 74, both hemispheres 47.3
Pretectal area
nTPM: 76.3
1816 Male, age 51, unknown 120.8
1944 Female, age 72, unknown 105.9
2007 Male, age 72, unknown 98.4
1817 Female, age 42, unknown 92.7
1815 Male, age 53, unknown 79.7
2224 Female, age 72, unknown 75.7
2667 Female, age 75, unknown 72.7
2825 Male, age 18, unknown 57.0
2407 Male, age 75, both hemispheres 48.4
2316 Male, age 76, right hemisphere 47.5
2273 Male, age 74, both hemispheres 40.3
Red nucleus
nTPM: 40.2
2785 Male, age 18, unknown 58.3
2584 Male, age 75, left hemisphere 51.9
1821 Female, age 72, unknown 44.6
1954 Female, age 42, unknown 42.8
2227 Male, age 72, unknown 38.2
2588 Male, age 74, left hemisphere 38.1
2769 Male, age 72, unknown 38.0
1904 Male, age 53, unknown 37.4
2823 Male, age 76, right hemisphere 35.6
2503 Female, age 72, unknown 35.4
1865 Male, age 51, unknown 31.6
2725 Female, age 75, unknown 31.0
Substantia nigra
nTPM: 65.3
1916 Female, age 42, unknown 94.6
1889 Female, age 72, unknown 84.9
1941 Male, age 53, unknown 77.7
2665 Male, age 74, both hemispheres 75.5
1851 Male, age 51, unknown 68.8
2241 Male, age 72, unknown 65.3
2409 Female, age 72, unknown 57.4
2699 Male, age 18, unknown 45.5
2583 Male, age 75, right hemisphere 44.6
2590 Female, age 75, unknown 38.8
Superior colliculus
nTPM: 69.2
2668 Female, age 75, unknown 148.1
2087 Female, age 72, unknown 96.3
2261 Male, age 18, unknown 77.3
1796 Male, age 53, unknown 74.1
1895 Male, age 76, right hemisphere 60.7
1839 Male, age 51, unknown 53.9
2664 Male, age 75, both hemispheres 53.8
1913 Female, age 42, unknown 47.3
1995 Male, age 72, unknown 41.3
2587 Male, age 74, left hemisphere 38.9
Ventral tegmental area
nTPM: 63.5
2410 Female, age 72, unknown 77.1
2218 Male, age 76, both hemispheres 74.6
1915 Female, age 42, unknown 71.7
1942 Male, age 51, unknown 61.4
2021 Male, age 53, unknown 55.4
2223 Female, age 72, unknown 40.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.0
Samples: 139

Max nTPM: 143.9
Min nTPM: 1.2
Std nTPM: 27.2
Median nTPM: 10.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 143.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 129.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 99.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 91.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 91.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 86.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 77.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 75.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 74.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 72.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 72.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.5
FF:10158-103A5 76 years, female 6.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 179.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 132.8
Samples: 4

Max nTPM: 215.9
Min nTPM: 42.4
Sample A Female 181.5
Sample B Female 91.3
Sample C Male 215.9
Sample D Male 42.4
Midbrain
nTPM: 174.8
Samples: 4

Max nTPM: 353.8
Min nTPM: 38.1
Sample A Female 38.1
Sample B Female 97.0
Sample C Male 353.8
Sample D Male 210.3
Periaqueductal gray
nTPM: 125.4
Samples: 3

Max nTPM: 168.8
Min nTPM: 99.4
Sample B Female 99.4
Sample C Male 168.8
Sample D Male 108.1
Superior colliculi
nTPM: 179.3
Samples: 4

Max nTPM: 259.3
Min nTPM: 97.7
Sample A Female 175.8
Sample B Female 97.7
Sample C Male 259.3
Sample D Male 184.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 199.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 199.0
Samples: 4

Max nTPM: 215.2
Min nTPM: 182.4
Sample A Male 182.4
Sample B Male 192.7
Sample C Female 215.2
Sample D Female 205.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.6
69013572 Antisense, RP_050309_02_E12, Mouse strain C57BL/6J (56 days, male) 21.6

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