MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:104.7 nTPM
HPA Brain:147.0 nTPM
GTEx:104.7 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:298.7 nTPM
Mouse:459.9 nTPM
Allen mouse:16.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 147.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.6
2019 Male, age 18, unknown 198.6
1830 Male, age 51, unknown 113.2
2411 Female, age 72, unknown 106.3
1833 Male, age 53, unknown 103.3
1870 Female, age 42, unknown 83.4
2219 Male, age 76, both hemispheres 76.0
1827 Male, age 72, unknown 72.8
2586 Male, age 75, left hemisphere 70.0
2666 Male, age 74, left hemisphere 68.6
2828 Female, age 72, unknown 43.5
Dorsal raphe nucleus
nTPM: 101.0
1828 Male, age 53, unknown 153.1
2047 Male, age 72, unknown 124.6
2298 Female, age 72, unknown 81.6
2750 Male, age 76, both hemispheres 74.2
2016 Female, age 72, unknown 71.6
Inferior colliculus
nTPM: 147.0
1848 Female, age 42, unknown 164.5
2849 Male, age 72, unknown 150.5
2097 Female, age 72, unknown 142.7
1890 Male, age 53, unknown 130.3
Median raphe nucleus
nTPM: 75.8
2220 Male, age 76, midline 75.8
Periaquaductal grey, anterior
nTPM: 65.7
2502 Female, age 75, unknown 87.1
1947 Male, age 18, unknown 64.8
1795 Male, age 51, unknown 45.1
Periaquaductal grey, dorsal
nTPM: 69.8
2464 Female, age 72, unknown 98.6
1840 Male, age 53, unknown 73.0
2850 Male, age 76, both hemispheres 58.2
1831 Male, age 72, unknown 49.4
Periaquaductal grey, lateral
nTPM: 58.2
2272 Male, age 74, both hemispheres 65.9
2140 Male, age 76, both hemispheres 61.9
2053 Male, age 18, unknown 46.7
Pretectal area
nTPM: 87.3
2007 Male, age 72, unknown 164.9
1817 Female, age 42, unknown 142.1
1944 Female, age 72, unknown 98.8
2407 Male, age 75, both hemispheres 84.9
2667 Female, age 75, unknown 78.8
1815 Male, age 53, unknown 69.8
2316 Male, age 76, right hemisphere 68.7
2825 Male, age 18, unknown 68.0
1816 Male, age 51, unknown 63.4
2224 Female, age 72, unknown 61.1
2273 Male, age 74, both hemispheres 59.7
Red nucleus
nTPM: 106.4
2785 Male, age 18, unknown 157.3
1821 Female, age 72, unknown 148.7
2227 Male, age 72, unknown 117.3
2769 Male, age 72, unknown 116.5
2823 Male, age 76, right hemisphere 107.6
2588 Male, age 74, left hemisphere 107.2
2584 Male, age 75, left hemisphere 105.1
1865 Male, age 51, unknown 103.1
1954 Female, age 42, unknown 99.1
2503 Female, age 72, unknown 79.0
2725 Female, age 75, unknown 69.8
1904 Male, age 53, unknown 65.7
Substantia nigra
nTPM: 81.4
1941 Male, age 53, unknown 160.7
1889 Female, age 72, unknown 124.0
2665 Male, age 74, both hemispheres 72.0
1916 Female, age 42, unknown 71.9
2590 Female, age 75, unknown 69.1
1851 Male, age 51, unknown 68.3
2241 Male, age 72, unknown 66.6
2583 Male, age 75, right hemisphere 64.0
2409 Female, age 72, unknown 62.1
2699 Male, age 18, unknown 55.4
Superior colliculus
nTPM: 80.2
1895 Male, age 76, right hemisphere 173.2
1839 Male, age 51, unknown 124.1
2668 Female, age 75, unknown 89.5
2587 Male, age 74, left hemisphere 85.5
2664 Male, age 75, both hemispheres 82.6
2087 Female, age 72, unknown 73.3
1796 Male, age 53, unknown 50.3
1913 Female, age 42, unknown 44.0
2261 Male, age 18, unknown 41.0
1995 Male, age 72, unknown 38.9
Ventral tegmental area
nTPM: 70.1
2410 Female, age 72, unknown 89.8
2223 Female, age 72, unknown 81.2
1915 Female, age 42, unknown 70.4
2218 Male, age 76, both hemispheres 69.6
1942 Male, age 51, unknown 62.1
2021 Male, age 53, unknown 47.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 104.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.7
Samples: 139

Max nTPM: 810.5
Min nTPM: 25.5
Std nTPM: 94.0
Median nTPM: 76.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 810.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 500.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 480.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 297.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 277.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 274.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 222.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 220.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 214.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 200.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 198.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.9
FF:10158-103A5 76 years, female 31.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 298.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 115.4
Samples: 4

Max nTPM: 188.4
Min nTPM: 64.5
Sample A Female 188.4
Sample B Female 64.5
Sample C Male 138.8
Sample D Male 70.0
Midbrain
nTPM: 160.9
Samples: 4

Max nTPM: 254.9
Min nTPM: 26.1
Sample A Female 26.1
Sample B Female 118.7
Sample C Male 254.9
Sample D Male 243.7
Periaqueductal gray
nTPM: 132.6
Samples: 3

Max nTPM: 153.7
Min nTPM: 119.6
Sample B Female 124.5
Sample C Male 153.7
Sample D Male 119.6
Superior colliculi
nTPM: 298.7
Samples: 4

Max nTPM: 414.8
Min nTPM: 108.0
Sample A Female 371.7
Sample B Female 108.0
Sample C Male 414.8
Sample D Male 300.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 459.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 459.9
Samples: 4

Max nTPM: 475.7
Min nTPM: 439.3
Sample A Male 439.3
Sample B Male 475.7
Sample C Female 467.5
Sample D Female 457.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.0
75651233 Antisense, RP_060518_01_D11, Mouse strain C57BL/6J (56 days, male) 17.1
69262346 Antisense, RP_050303_02_C04, Mouse strain C57BL/6J (56 days, male) 15.0

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