HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		159.944
RNA expressioni
Consensus:48.4 nTPM
HPA Brain:43.8 nTPM
GTEx:48.4 nTPM
FANTOM5:27.7 Scaled Tags Per Million
Pig:49.4 nTPM
Mouse:67.3 nTPM
Allen mouse:7.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody CAB002779Antibody CAB016119
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB079000
Hippocampal formation mean intensity 159.944
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 102.724
Molecular layer of the dentate gyrus 102.029
Granular dentate gyrus 95.816
CA1 - oriens layer 123.050
CA1 - pyramidal layer 89.131
CA1 - radiatum layer 125.058
CA2 - oriens layer 125.716
CA2 - pyramidal layer 104.164
CA2 - radiatum layer 136.308
CA3 - oriens layer 123.359
CA3 - pyramidal layer 99.182
CA3 - radiatum layer 123.291
Stratum lucidum 88.869
Lacunosum moleculare 92.841
Subiculum 95.717

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 43.8
Sample id Sample description nTPM
Hippocampus
nTPM: 35.0
2148 Female, age 91, left hemisphere 50.1
2621 Female, age 67, right hemisphere 42.5
1898 Male, age 80, left hemisphere 42.1
1855 Male, age 76, left hemisphere 26.7
2529 Female, age 94, left hemisphere 26.1
1911 Female, age 85, right hemisphere 22.4
Dentate gyrus
nTPM: 37.0
2528 Male, age 74, both hemispheres 44.4
2530 Female, age 94, left hemisphere 43.1
2531 Female, age 67, both hemispheres 42.5
1927 Female, age 91, both hemispheres 35.7
2246 Female, age 85, both hemispheres 28.6
2010 Male, age 76, both hemispheres 27.6
Entorhinal gyrus
nTPM: 40.2
2613 Female, age 94, left hemisphere 49.4
2686 Male, age 75, right hemisphere 47.2
2764 Male, age 80, right hemisphere 43.0
1938 Female, age 85, left hemisphere 34.1
2117 Female, age 91, right hemisphere 33.8
1787 Male, age 76, left hemisphere 33.6
Hippocampus, CA1
nTPM: 32.6
2527 Male, age 74, both hemispheres 37.9
2749 Male, age 80, left hemisphere 35.6
2082 Female, age 91, right hemisphere 34.8
2045 Male, age 76, both hemispheres 27.6
1873 Female, age 85, both hemispheres 27.2
Hippocampus, CA2
nTPM: 41.6
2437 Female, age 94, left hemisphere 58.9
1892 Male, age 76, both hemispheres 55.2
2249 Male, age 74, both hemispheres 40.6
1963 Male, age 80, left hemisphere 33.1
1940 Female, age 85, left hemisphere 31.5
2113 Female, age 91, right hemisphere 30.4
Hippocampus, CA3
nTPM: 39.2
2620 Female, age 94, left hemisphere 52.0
1867 Male, age 76, both hemispheres 51.0
2861 Female, age 67, both hemispheres 37.6
2436 Male, age 74, both hemispheres 37.3
1891 Female, age 85, both hemispheres 31.0
2137 Male, age 80, left hemisphere 26.0
Parahippocampal cortex
nTPM: 41.5
2692 Male, age 74, both hemispheres 53.5
1990 Female, age 91, right hemisphere 48.5
2693 Female, age 94, both hemispheres 47.2
2622 Female, age 67, right hemisphere 45.8
1850 Male, age 80, both hemispheres 45.6
2532 Female, age 72, left hemisphere 43.0
2245 Female, age 91, both hemispheres 38.5
2250 Female, age 67, right hemisphere 35.0
1933 Female, age 85, both hemispheres 31.8
2018 Male, age 76, both hemispheres 26.2
Perirhinal gyrus
nTPM: 38.7
2521 Female, age 94, right hemisphere 47.9
1794 Male, age 80, right hemisphere 41.8
1847 Female, age 91, left hemisphere 40.0
1841 Female, age 85, right hemisphere 34.1
2848 Male, age 76, right hemisphere 29.6
Subiculum
nTPM: 43.8
2438 Female, age 94, left hemisphere 63.1
2619 Male, age 74, both hemispheres 53.0
1901 Male, age 80, both hemispheres 42.4
1977 Female, age 85, both hemispheres 39.6
2729 Female, age 91, right hemisphere 36.8
2042 Male, age 76, both hemispheres 27.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 48.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 48.4
Samples: 197

Max nTPM: 143.2
Min nTPM: 16.8
Std nTPM: 19.7
Median nTPM: 44.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 143.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 135.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 118.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 117.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 111.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 95.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 94.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 93.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 91.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 90.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 88.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.7
FF:10169-103B7 60 years, female 34.2
FF:10153-102I9 76 years, female 21.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 49.4
Pig sample Sample description nTPM
Subiculum
nTPM: 37.1
Samples: 4

Max nTPM: 50.1
Min nTPM: 28.1
Sample A Female 39.3
Sample B Female 28.1
Sample C Male 50.1
Sample D Male 31.0
Dorsal hippocampus
nTPM: 35.4
Samples: 4

Max nTPM: 55.8
Min nTPM: 24.5
Sample A Female 32.9
Sample B Female 28.4
Sample C Male 55.8
Sample D Male 24.5
Entorhinal cortex
nTPM: 49.4
Samples: 4

Max nTPM: 65.8
Min nTPM: 38.8
Sample A Female 42.8
Sample B Female 65.8
Sample C Male 38.8
Sample D Male 50.2
Ventral hippocampus
nTPM: 48.7
Samples: 4

Max nTPM: 81.0
Min nTPM: 25.6
Sample A Female 58.0
Sample B Female 30.2
Sample C Male 81.0
Sample D Male 25.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 67.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 56.9
Samples: 4

Max nTPM: 76.2
Min nTPM: 32.4
Sample A Male 76.2
Sample B Male 62.8
Sample C Female 56.1
Sample D Female 32.4
Hippocampal formation
nTPM: 67.3
Samples: 4

Max nTPM: 71.5
Min nTPM: 61.0
Sample A Male 61.0
Sample B Male 70.1
Sample C Female 71.5
Sample D Female 66.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.3
75651233 Antisense, RP_060518_01_D11, Mouse strain C57BL/6J (56 days, male) 7.5
69262346 Antisense, RP_050303_02_C04, Mouse strain C57BL/6J (56 days, male) 7.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org