MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.2 nTPM
HPA Brain:14.1 nTPM
GTEx:10.2 nTPM
FANTOM5:11.2 Scaled Tags Per Million
Pig:6.1 nTPM
Mouse:7.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.2
2586 Male, age 75, left hemisphere 18.8
2219 Male, age 76, both hemispheres 13.3
2828 Female, age 72, unknown 13.0
1827 Male, age 72, unknown 12.7
2666 Male, age 74, left hemisphere 11.5
1870 Female, age 42, unknown 10.9
2411 Female, age 72, unknown 10.9
1833 Male, age 53, unknown 10.8
1830 Male, age 51, unknown 10.1
2019 Male, age 18, unknown 9.7
Dorsal raphe nucleus
nTPM: 11.9
2047 Male, age 72, unknown 13.7
2298 Female, age 72, unknown 12.8
1828 Male, age 53, unknown 12.3
2016 Female, age 72, unknown 10.8
2750 Male, age 76, both hemispheres 9.9
Inferior colliculus
nTPM: 14.1
1890 Male, age 53, unknown 15.1
2097 Female, age 72, unknown 15.0
1848 Female, age 42, unknown 13.3
2849 Male, age 72, unknown 12.9
Median raphe nucleus
nTPM: 10.5
2220 Male, age 76, midline 10.5
Periaquaductal grey, anterior
nTPM: 12.9
2502 Female, age 75, unknown 13.9
1795 Male, age 51, unknown 13.2
1947 Male, age 18, unknown 11.5
Periaquaductal grey, dorsal
nTPM: 11.0
1831 Male, age 72, unknown 12.0
1840 Male, age 53, unknown 11.4
2464 Female, age 72, unknown 11.2
2850 Male, age 76, both hemispheres 9.3
Periaquaductal grey, lateral
nTPM: 10.8
2053 Male, age 18, unknown 12.3
2140 Male, age 76, both hemispheres 10.4
2272 Male, age 74, both hemispheres 9.6
Pretectal area
nTPM: 11.0
1816 Male, age 51, unknown 12.9
2825 Male, age 18, unknown 12.2
2316 Male, age 76, right hemisphere 12.1
2407 Male, age 75, both hemispheres 12.1
2007 Male, age 72, unknown 11.2
2224 Female, age 72, unknown 11.1
1944 Female, age 72, unknown 10.7
2667 Female, age 75, unknown 10.1
1815 Male, age 53, unknown 10.0
2273 Male, age 74, both hemispheres 9.7
1817 Female, age 42, unknown 8.7
Red nucleus
nTPM: 11.0
2584 Male, age 75, left hemisphere 13.1
2769 Male, age 72, unknown 12.3
2227 Male, age 72, unknown 11.9
2785 Male, age 18, unknown 11.7
1954 Female, age 42, unknown 11.4
2588 Male, age 74, left hemisphere 11.2
2503 Female, age 72, unknown 10.9
1821 Female, age 72, unknown 10.1
1904 Male, age 53, unknown 10.0
1865 Male, age 51, unknown 9.8
2725 Female, age 75, unknown 9.8
2823 Male, age 76, right hemisphere 9.4
Substantia nigra
nTPM: 10.5
2583 Male, age 75, right hemisphere 13.2
2590 Female, age 75, unknown 12.0
2665 Male, age 74, both hemispheres 11.9
1916 Female, age 42, unknown 11.2
1941 Male, age 53, unknown 10.4
1889 Female, age 72, unknown 9.7
1851 Male, age 51, unknown 9.3
2409 Female, age 72, unknown 9.2
2699 Male, age 18, unknown 9.1
2241 Male, age 72, unknown 8.8
Superior colliculus
nTPM: 12.1
2664 Male, age 75, both hemispheres 16.7
2261 Male, age 18, unknown 13.6
1796 Male, age 53, unknown 13.2
1895 Male, age 76, right hemisphere 12.7
1839 Male, age 51, unknown 12.2
2087 Female, age 72, unknown 11.6
2668 Female, age 75, unknown 11.5
1913 Female, age 42, unknown 10.8
2587 Male, age 74, left hemisphere 10.0
1995 Male, age 72, unknown 8.9
Ventral tegmental area
nTPM: 10.9
1942 Male, age 51, unknown 12.9
1915 Female, age 42, unknown 11.9
2021 Male, age 53, unknown 11.1
2410 Female, age 72, unknown 10.6
2223 Female, age 72, unknown 9.9
2218 Male, age 76, both hemispheres 8.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.2
Samples: 139

Max nTPM: 17.7
Min nTPM: 4.8
Std nTPM: 2.1
Median nTPM: 10.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 16.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 15.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 14.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 14.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 14.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 13.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 13.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 13.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 13.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.2
FF:10158-103A5 76 years, female 11.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.5
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.3
Sample A Female 5.4
Sample B Female 4.1
Sample C Male 5.1
Sample D Male 3.3
Midbrain
nTPM: 5.8
Samples: 4

Max nTPM: 8.6
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 4.4
Sample C Male 8.6
Sample D Male 6.2
Periaqueductal gray
nTPM: 4.3
Samples: 3

Max nTPM: 5.0
Min nTPM: 3.8
Sample B Female 4.2
Sample C Male 5.0
Sample D Male 3.8
Superior colliculi
nTPM: 6.1
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.5
Sample A Female 5.9
Sample B Female 5.5
Sample C Male 7.1
Sample D Male 6.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 8.3
Min nTPM: 7.1
Sample A Male 8.3
Sample B Male 7.1
Sample C Female 7.9
Sample D Female 7.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69528136 Antisense, RP_050421_03_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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