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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
34.1
nTPM
Monaco:
55.9
nTPM
Schmiedel:
37.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
34.1
HPA sample
nTPM
gdT-cell nTPM: 26.4
Samples: 6
Max nTPM: 41.6
Min nTPM: 18.0
P10809_1007
24.2
P10809_1022
28.7
P10809_1041
41.6
P10809_1060
23.8
P10809_1077
22.3
P10809_1098
18.0
MAIT T-cell nTPM: 29.5
Samples: 6
Max nTPM: 46.3
Min nTPM: 18.6
P10809_1006
18.6
P10809_1024
46.3
P10809_1043
21.9
P10809_1062
26.1
P10809_1083
27.4
P10809_1097
36.7
Memory CD4 T-cell nTPM: 21.9
Samples: 6
Max nTPM: 26.0
Min nTPM: 18.5
P10809_1014
18.5
P10809_1026
26.0
P10809_1045
24.8
P10809_1064
20.4
P10809_1086
21.2
P10809_1113
20.3
Memory CD8 T-cell nTPM: 23.7
Samples: 5
Max nTPM: 28.2
Min nTPM: 19.0
P10809_1012
28.2
P10809_1027
27.8
P10809_1046
20.7
P10809_1065
22.8
P10809_1111
19.0
Naive CD4 T-cell nTPM: 13.3
Samples: 6
Max nTPM: 17.1
Min nTPM: 11.1
P10809_1015
13.8
P10809_1030
11.9
P10809_1049
11.9
P10809_1068
17.1
P10809_1085
11.1
P10809_1112
14.2
Naive CD8 T-cell nTPM: 22.3
Samples: 6
Max nTPM: 27.6
Min nTPM: 15.9
P10809_1016
15.9
P10809_1031
27.6
P10809_1050
17.6
P10809_1069
21.0
P10809_1087
26.8
P10809_1110
25.0
T-reg nTPM: 34.2
Samples: 6
Max nTPM: 45.0
Min nTPM: 15.6
P10809_1018
32.8
P10809_1037
45.0
P10809_1056
15.6
P10809_1075
30.8
P10809_1094
42.0
P10809_1106
38.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
55.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 39.6
Samples: 4
Max nTPM: 58.6
Min nTPM: 26.1
RHH5202_R3573
43.4
RHH5230_R3602
30.2
RHH5259_R3631
26.1
RHH5288_R3660
58.6
Effector memory CD8 T-cell nTPM: 53.4
Samples: 4
Max nTPM: 72.7
Min nTPM: 39.8
RHH5203_R3574
72.7
RHH5231_R3603
53.1
RHH5260_R3632
39.8
RHH5289_R3661
47.9
MAIT T-cell nTPM: 39.7
Samples: 4
Max nTPM: 44.2
Min nTPM: 34.4
RHH5233_R3605
42.2
RHH5205_R3576
37.9
RHH5262_R3634
34.4
RHH5297_R3663
44.2
Memory CD4 T-cell TFH nTPM: 34.9
Samples: 4
Max nTPM: 39.7
Min nTPM: 27.3
RHH5300_R3666
39.7
RHH5236_R3608
27.3
RHH5265_R3637
34.1
RHH5208_R3579
38.6
Memory CD4 T-cell Th1 nTPM: 32.8
Samples: 4
Max nTPM: 42.2
Min nTPM: 20.1
RHH5210_R3581
38.2
RHH5302_R3668
42.2
RHH5238_R3610
20.1
RHH5267_R3639
30.8
Memory CD4 T-cell Th1/Th17 nTPM: 35.9
Samples: 4
Max nTPM: 47.5
Min nTPM: 22.7
RHH5303_R3669
47.5
RHH5211_R3582
42.3
RHH5239_R3611
22.7
RHH5268_R3640
31.0
Memory CD4 T-cell Th17 nTPM: 33.6
Samples: 4
Max nTPM: 43.5
Min nTPM: 24.0
RHH5304_R3670
37.9
RHH5212_R3583
43.5
RHH5240_R3612
28.8
RHH5269_R3641
24.0
Memory CD4 T-cell Th2 nTPM: 34.5
Samples: 4
Max nTPM: 42.6
Min nTPM: 23.6
RHH5305_R3671
42.6
RHH5213_R3584
35.2
RHH5241_R3613
36.6
RHH5270_R3642
23.6
Naive CD4 T-cell nTPM: 24.9
Samples: 4
Max nTPM: 26.7
Min nTPM: 23.0
RHH5306_R3672
26.7
RHH5214_R3585
23.0
RHH5242_R3614
25.2
RHH5271_R3643
24.6
Naive CD8 T-cell nTPM: 29.6
Samples: 4
Max nTPM: 42.4
Min nTPM: 13.6
RHH5201_R3572
42.4
RHH5229_R3601
13.6
RHH5258_R3630
36.4
RHH5287_R3659
25.9
Non-Vd2 gdTCR nTPM: 47.6
Samples: 4
Max nTPM: 54.0
Min nTPM: 39.2
RHH5235_R3607
39.2
RHH5264_R3636
48.1
RHH5207_R3578
54.0
RHH5299_R3665
48.9
T-reg nTPM: 31.5
Samples: 4
Max nTPM: 36.7
Min nTPM: 27.6
RHH5301_R3667
28.4
RHH5237_R3609
36.7
RHH5266_R3638
33.3
RHH5209_R3580
27.6
Terminal effector memory CD4 T-cell nTPM: 34.2
Samples: 2
Max nTPM: 43.7
Min nTPM: 24.6
RHH5243_R3615
24.6
RHH5272_R3644
43.7
Terminal effector memory CD8 T-cell nTPM: 55.9
Samples: 4
Max nTPM: 75.2
Min nTPM: 41.1
RHH5232_R3604
75.2
RHH5204_R3575
49.4
RHH5261_R3633
41.1
RHH5296_R3662
57.8
Vd2 gdTCR nTPM: 47.0
Samples: 4
Max nTPM: 57.5
Min nTPM: 38.1
RHH5234_R3606
57.5
RHH5206_R3577
51.2
RHH5263_R3635
41.0
RHH5298_R3664
38.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
