MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:261.7 nTPM
HPA Brain:427.4 nTPM
GTEx:261.7 nTPM
FANTOM5:691.8 Scaled Tags Per Million
Pig:293.9 nTPM
Mouse:224.1 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 427.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 396.6
2828 Female, age 72, unknown 442.8
1870 Female, age 42, unknown 439.5
2586 Male, age 75, left hemisphere 426.3
2411 Female, age 72, unknown 420.7
1833 Male, age 53, unknown 405.4
1827 Male, age 72, unknown 397.7
2666 Male, age 74, left hemisphere 396.2
1830 Male, age 51, unknown 378.5
2019 Male, age 18, unknown 372.0
2219 Male, age 76, both hemispheres 286.6
Dorsal raphe nucleus
nTPM: 427.4
2016 Female, age 72, unknown 462.8
2298 Female, age 72, unknown 427.9
1828 Male, age 53, unknown 418.0
2750 Male, age 76, both hemispheres 417.2
2047 Male, age 72, unknown 410.9
Inferior colliculus
nTPM: 379.1
1848 Female, age 42, unknown 412.3
2849 Male, age 72, unknown 369.3
2097 Female, age 72, unknown 367.9
1890 Male, age 53, unknown 367.0
Median raphe nucleus
nTPM: 382.5
2220 Male, age 76, midline 382.5
Periaquaductal grey, anterior
nTPM: 422.5
2502 Female, age 75, unknown 435.4
1947 Male, age 18, unknown 430.7
1795 Male, age 51, unknown 401.3
Periaquaductal grey, dorsal
nTPM: 426.1
2850 Male, age 76, both hemispheres 490.6
1840 Male, age 53, unknown 423.8
2464 Female, age 72, unknown 396.8
1831 Male, age 72, unknown 393.4
Periaquaductal grey, lateral
nTPM: 420.6
2140 Male, age 76, both hemispheres 460.7
2053 Male, age 18, unknown 433.7
2272 Male, age 74, both hemispheres 367.6
Pretectal area
nTPM: 390.2
2667 Female, age 75, unknown 425.4
1817 Female, age 42, unknown 412.1
2224 Female, age 72, unknown 410.4
2273 Male, age 74, both hemispheres 409.9
2825 Male, age 18, unknown 398.2
1815 Male, age 53, unknown 395.0
2316 Male, age 76, right hemisphere 392.7
1944 Female, age 72, unknown 378.4
1816 Male, age 51, unknown 375.8
2007 Male, age 72, unknown 356.7
2407 Male, age 75, both hemispheres 337.6
Red nucleus
nTPM: 413.5
1821 Female, age 72, unknown 483.0
1904 Male, age 53, unknown 450.9
1865 Male, age 51, unknown 442.8
2503 Female, age 72, unknown 435.1
2823 Male, age 76, right hemisphere 430.5
1954 Female, age 42, unknown 429.8
2769 Male, age 72, unknown 425.6
2227 Male, age 72, unknown 424.1
2725 Female, age 75, unknown 385.3
2588 Male, age 74, left hemisphere 374.7
2785 Male, age 18, unknown 365.5
2584 Male, age 75, left hemisphere 314.7
Substantia nigra
nTPM: 396.4
2699 Male, age 18, unknown 453.6
1851 Male, age 51, unknown 434.6
1916 Female, age 42, unknown 424.8
2241 Male, age 72, unknown 407.4
1889 Female, age 72, unknown 385.8
2590 Female, age 75, unknown 383.1
2409 Female, age 72, unknown 382.5
2665 Male, age 74, both hemispheres 371.9
1941 Male, age 53, unknown 362.3
2583 Male, age 75, right hemisphere 358.1
Superior colliculus
nTPM: 397.1
1913 Female, age 42, unknown 447.6
1995 Male, age 72, unknown 447.2
2664 Male, age 75, both hemispheres 409.9
1839 Male, age 51, unknown 395.3
2587 Male, age 74, left hemisphere 392.1
1796 Male, age 53, unknown 388.0
2668 Female, age 75, unknown 386.9
2261 Male, age 18, unknown 380.4
2087 Female, age 72, unknown 368.6
1895 Male, age 76, right hemisphere 354.8
Ventral tegmental area
nTPM: 409.7
2410 Female, age 72, unknown 446.3
2021 Male, age 53, unknown 420.0
2223 Female, age 72, unknown 406.0
1915 Female, age 42, unknown 396.8
2218 Male, age 76, both hemispheres 396.2
1942 Male, age 51, unknown 392.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 261.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 261.7
Samples: 139

Max nTPM: 543.1
Min nTPM: 130.0
Std nTPM: 68.5
Median nTPM: 246.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 543.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 519.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 458.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 449.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 431.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 418.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 413.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 404.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 395.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 372.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 372.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 691.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 691.8
FF:10158-103A5 76 years, female 691.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 293.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 289.3
Samples: 4

Max nTPM: 330.2
Min nTPM: 255.2
Sample A Female 330.2
Sample B Female 255.2
Sample C Male 278.6
Sample D Male 293.2
Midbrain
nTPM: 293.9
Samples: 4

Max nTPM: 443.3
Min nTPM: 210.2
Sample A Female 443.3
Sample B Female 287.9
Sample C Male 234.3
Sample D Male 210.2
Periaqueductal gray
nTPM: 279.6
Samples: 3

Max nTPM: 294.2
Min nTPM: 267.3
Sample B Female 277.4
Sample C Male 294.2
Sample D Male 267.3
Superior colliculi
nTPM: 256.7
Samples: 4

Max nTPM: 297.9
Min nTPM: 225.5
Sample A Female 297.9
Sample B Female 225.5
Sample C Male 245.8
Sample D Male 257.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 224.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 224.2
Samples: 4

Max nTPM: 247.6
Min nTPM: 208.5
Sample A Male 247.6
Sample B Male 213.3
Sample C Female 208.5
Sample D Female 227.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
2663 Antisense, RP_Baylor_103335, Mouse strain C57BL/6J (56 days, male) 7.5
68300908 Antisense, RP_041129_02_D05, Mouse strain C57BL/6J (56 days, male) 3.4

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