MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.2 nTPM
HPA Brain:23.4 nTPM
GTEx:5.2 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:28.1 nTPM
Mouse:28.7 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.7
2019 Male, age 18, unknown 26.6
2586 Male, age 75, left hemisphere 25.1
2219 Male, age 76, both hemispheres 23.4
2666 Male, age 74, left hemisphere 23.0
1830 Male, age 51, unknown 22.4
2411 Female, age 72, unknown 22.4
1827 Male, age 72, unknown 21.8
1833 Male, age 53, unknown 21.7
1870 Female, age 42, unknown 21.2
2828 Female, age 72, unknown 19.2
Dorsal raphe nucleus
nTPM: 20.7
1828 Male, age 53, unknown 22.9
2047 Male, age 72, unknown 21.2
2016 Female, age 72, unknown 20.1
2750 Male, age 76, both hemispheres 19.7
2298 Female, age 72, unknown 19.5
Inferior colliculus
nTPM: 22.6
1848 Female, age 42, unknown 23.1
2097 Female, age 72, unknown 22.8
2849 Male, age 72, unknown 22.4
1890 Male, age 53, unknown 21.9
Median raphe nucleus
nTPM: 20.8
2220 Male, age 76, midline 20.8
Periaquaductal grey, anterior
nTPM: 22.2
2502 Female, age 75, unknown 23.9
1947 Male, age 18, unknown 22.2
1795 Male, age 51, unknown 20.6
Periaquaductal grey, dorsal
nTPM: 20.0
1840 Male, age 53, unknown 21.1
2464 Female, age 72, unknown 20.8
1831 Male, age 72, unknown 20.6
2850 Male, age 76, both hemispheres 17.3
Periaquaductal grey, lateral
nTPM: 18.6
2053 Male, age 18, unknown 19.5
2272 Male, age 74, both hemispheres 19.2
2140 Male, age 76, both hemispheres 17.0
Pretectal area
nTPM: 22.4
2007 Male, age 72, unknown 26.9
1817 Female, age 42, unknown 26.2
1816 Male, age 51, unknown 25.3
1815 Male, age 53, unknown 23.9
2407 Male, age 75, both hemispheres 23.8
1944 Female, age 72, unknown 22.9
2273 Male, age 74, both hemispheres 20.4
2825 Male, age 18, unknown 19.8
2224 Female, age 72, unknown 19.3
2667 Female, age 75, unknown 19.3
2316 Male, age 76, right hemisphere 18.8
Red nucleus
nTPM: 22.0
2584 Male, age 75, left hemisphere 26.2
1821 Female, age 72, unknown 24.2
2785 Male, age 18, unknown 23.9
2588 Male, age 74, left hemisphere 23.2
2503 Female, age 72, unknown 22.2
2725 Female, age 75, unknown 22.1
1865 Male, age 51, unknown 20.8
2227 Male, age 72, unknown 20.7
2769 Male, age 72, unknown 20.5
1954 Female, age 42, unknown 20.3
2823 Male, age 76, right hemisphere 20.2
1904 Male, age 53, unknown 20.1
Substantia nigra
nTPM: 23.4
1916 Female, age 42, unknown 25.2
1941 Male, age 53, unknown 24.8
2583 Male, age 75, right hemisphere 24.4
2409 Female, age 72, unknown 24.3
2241 Male, age 72, unknown 24.1
1889 Female, age 72, unknown 23.6
1851 Male, age 51, unknown 23.3
2665 Male, age 74, both hemispheres 22.5
2590 Female, age 75, unknown 22.1
2699 Male, age 18, unknown 19.8
Superior colliculus
nTPM: 21.9
2668 Female, age 75, unknown 24.5
2664 Male, age 75, both hemispheres 24.2
1895 Male, age 76, right hemisphere 23.6
1839 Male, age 51, unknown 22.6
2587 Male, age 74, left hemisphere 21.8
2261 Male, age 18, unknown 21.4
2087 Female, age 72, unknown 21.1
1796 Male, age 53, unknown 20.7
1913 Female, age 42, unknown 19.8
1995 Male, age 72, unknown 19.5
Ventral tegmental area
nTPM: 21.1
2410 Female, age 72, unknown 22.7
2223 Female, age 72, unknown 22.2
1915 Female, age 42, unknown 21.3
1942 Male, age 51, unknown 20.6
2218 Male, age 76, both hemispheres 20.6
2021 Male, age 53, unknown 19.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.2
Samples: 139

Max nTPM: 8.3
Min nTPM: 2.9
Std nTPM: 0.9
Median nTPM: 5.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 8.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 7.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 7.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 7.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 7.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 7.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 6.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 6.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 6.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 6.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 6.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.9
Samples: 4

Max nTPM: 24.4
Min nTPM: 21.6
Sample A Female 24.4
Sample B Female 21.6
Sample C Male 23.9
Sample D Male 21.6
Midbrain
nTPM: 28.1
Samples: 4

Max nTPM: 33.7
Min nTPM: 25.0
Sample A Female 27.0
Sample B Female 25.0
Sample C Male 33.7
Sample D Male 26.8
Periaqueductal gray
nTPM: 22.4
Samples: 3

Max nTPM: 23.1
Min nTPM: 21.2
Sample B Female 23.0
Sample C Male 23.1
Sample D Male 21.2
Superior colliculi
nTPM: 26.7
Samples: 4

Max nTPM: 32.5
Min nTPM: 22.9
Sample A Female 25.4
Sample B Female 22.9
Sample C Male 32.5
Sample D Male 25.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.7
Samples: 4

Max nTPM: 31.4
Min nTPM: 25.1
Sample A Male 25.1
Sample B Male 29.6
Sample C Female 31.4
Sample D Female 28.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
930 Antisense, RP_040315_01_24, Mouse strain C57BL/6J (56 days, male) 1.6
931 Antisense, RP_040315_01_24, Mouse strain C57BL/6J (56 days, male) 1.5

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