MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.1 nTPM
HPA Brain:16.4 nTPM
GTEx:10.1 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:9.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.6
1827 Male, age 72, unknown 9.4
2586 Male, age 75, left hemisphere 9.0
2411 Female, age 72, unknown 8.8
2666 Male, age 74, left hemisphere 8.8
2828 Female, age 72, unknown 8.4
1833 Male, age 53, unknown 7.8
1870 Female, age 42, unknown 7.6
1830 Male, age 51, unknown 7.3
2219 Male, age 76, both hemispheres 5.0
2019 Male, age 18, unknown 3.7
Dorsal raphe nucleus
nTPM: 12.1
2298 Female, age 72, unknown 19.7
2016 Female, age 72, unknown 18.0
1828 Male, age 53, unknown 9.6
2047 Male, age 72, unknown 8.2
2750 Male, age 76, both hemispheres 5.1
Inferior colliculus
nTPM: 6.5
1890 Male, age 53, unknown 9.8
2097 Female, age 72, unknown 7.0
2849 Male, age 72, unknown 4.9
1848 Female, age 42, unknown 4.2
Median raphe nucleus
nTPM: 6.6
2220 Male, age 76, midline 6.6
Periaquaductal grey, anterior
nTPM: 9.9
1795 Male, age 51, unknown 11.7
2502 Female, age 75, unknown 9.3
1947 Male, age 18, unknown 8.8
Periaquaductal grey, dorsal
nTPM: 13.9
2850 Male, age 76, both hemispheres 22.6
1831 Male, age 72, unknown 13.0
1840 Male, age 53, unknown 11.8
2464 Female, age 72, unknown 8.2
Periaquaductal grey, lateral
nTPM: 16.4
2272 Male, age 74, both hemispheres 22.8
2053 Male, age 18, unknown 14.1
2140 Male, age 76, both hemispheres 12.2
Pretectal area
nTPM: 8.2
2224 Female, age 72, unknown 15.9
2273 Male, age 74, both hemispheres 14.6
2825 Male, age 18, unknown 10.1
1816 Male, age 51, unknown 9.0
2667 Female, age 75, unknown 7.3
1944 Female, age 72, unknown 7.2
1815 Male, age 53, unknown 5.7
1817 Female, age 42, unknown 5.6
2007 Male, age 72, unknown 5.5
2316 Male, age 76, right hemisphere 5.1
2407 Male, age 75, both hemispheres 4.5
Red nucleus
nTPM: 5.9
2584 Male, age 75, left hemisphere 12.9
2725 Female, age 75, unknown 8.3
2503 Female, age 72, unknown 6.7
2588 Male, age 74, left hemisphere 6.0
1821 Female, age 72, unknown 5.9
2227 Male, age 72, unknown 5.7
1954 Female, age 42, unknown 5.0
2769 Male, age 72, unknown 4.8
1904 Male, age 53, unknown 4.7
1865 Male, age 51, unknown 4.1
2823 Male, age 76, right hemisphere 3.1
2785 Male, age 18, unknown 3.0
Substantia nigra
nTPM: 10.4
2699 Male, age 18, unknown 14.9
2241 Male, age 72, unknown 12.9
1851 Male, age 51, unknown 11.7
2665 Male, age 74, both hemispheres 11.6
1916 Female, age 42, unknown 11.4
2590 Female, age 75, unknown 9.5
2409 Female, age 72, unknown 9.1
2583 Male, age 75, right hemisphere 8.7
1889 Female, age 72, unknown 7.2
1941 Male, age 53, unknown 6.8
Superior colliculus
nTPM: 8.6
2261 Male, age 18, unknown 16.2
1995 Male, age 72, unknown 12.1
1796 Male, age 53, unknown 10.7
2087 Female, age 72, unknown 9.2
1913 Female, age 42, unknown 8.6
2587 Male, age 74, left hemisphere 8.1
2668 Female, age 75, unknown 6.4
1839 Male, age 51, unknown 5.7
2664 Male, age 75, both hemispheres 5.5
1895 Male, age 76, right hemisphere 4.0
Ventral tegmental area
nTPM: 11.7
2021 Male, age 53, unknown 14.5
1915 Female, age 42, unknown 13.7
1942 Male, age 51, unknown 12.8
2410 Female, age 72, unknown 11.8
2218 Male, age 76, both hemispheres 9.7
2223 Female, age 72, unknown 7.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.1
Samples: 139

Max nTPM: 26.5
Min nTPM: 3.4
Std nTPM: 4.1
Median nTPM: 9.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 26.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 25.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 24.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 23.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 18.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 17.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 17.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 17.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 16.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 15.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 15.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.8
Samples: 4

Max nTPM: 38.2
Min nTPM: 7.0
Sample A Female 8.2
Sample B Female 38.2
Sample C Male 7.0
Sample D Male 13.9
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 8.6
Min nTPM: 4.3
Sample A Female 8.6
Sample B Female 7.9
Sample C Male 7.8
Sample D Male 4.3
Periaqueductal gray
nTPM: 3.3
Samples: 3

Max nTPM: 4.0
Min nTPM: 2.3
Sample B Female 4.0
Sample C Male 3.6
Sample D Male 2.3
Superior colliculi
nTPM: 14.6
Samples: 4

Max nTPM: 25.2
Min nTPM: 7.1
Sample A Female 18.6
Sample B Female 25.2
Sample C Male 7.1
Sample D Male 7.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.4
Sample A Male 10.8
Sample B Male 10.2
Sample C Female 8.4
Sample D Female 8.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69672294 Antisense, RP_050428_03_D11, Mouse strain C57BL/6J (56 days, male) 0.0

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