HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:30.2 nTPM
HPA Brain:36.5 nTPM
GTEx:30.2 nTPM
FANTOM5:37.3 Scaled Tags Per Million
Pig:31.4 nTPM
Mouse:49.0 nTPM
Allen mouse:3.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040460
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Hippocampus
nTPM: 32.6
1898 Male, age 80, left hemisphere 40.9
2621 Female, age 67, right hemisphere 33.8
2148 Female, age 91, left hemisphere 33.7
2529 Female, age 94, left hemisphere 30.5
1855 Male, age 76, left hemisphere 29.0
1911 Female, age 85, right hemisphere 27.6
Dentate gyrus
nTPM: 34.5
1927 Female, age 91, both hemispheres 47.9
2530 Female, age 94, left hemisphere 40.7
2528 Male, age 74, both hemispheres 32.8
2010 Male, age 76, both hemispheres 31.8
2531 Female, age 67, both hemispheres 27.0
2246 Female, age 85, both hemispheres 26.6
Entorhinal gyrus
nTPM: 30.5
1938 Female, age 85, left hemisphere 36.7
1787 Male, age 76, left hemisphere 32.0
2613 Female, age 94, left hemisphere 31.4
2764 Male, age 80, right hemisphere 30.6
2117 Female, age 91, right hemisphere 27.2
2686 Male, age 75, right hemisphere 25.2
Hippocampus, CA1
nTPM: 34.4
2749 Male, age 80, left hemisphere 54.6
1873 Female, age 85, both hemispheres 41.0
2527 Male, age 74, both hemispheres 31.4
2045 Male, age 76, both hemispheres 23.3
2082 Female, age 91, right hemisphere 21.8
Hippocampus, CA2
nTPM: 33.3
1963 Male, age 80, left hemisphere 45.4
1892 Male, age 76, both hemispheres 39.6
2437 Female, age 94, left hemisphere 32.0
1940 Female, age 85, left hemisphere 30.5
2249 Male, age 74, both hemispheres 28.5
2113 Female, age 91, right hemisphere 23.6
Hippocampus, CA3
nTPM: 31.7
2137 Male, age 80, left hemisphere 38.5
2620 Female, age 94, left hemisphere 35.9
2861 Female, age 67, both hemispheres 33.8
1867 Male, age 76, both hemispheres 28.2
1891 Female, age 85, both hemispheres 27.0
2436 Male, age 74, both hemispheres 26.9
Parahippocampal cortex
nTPM: 29.8
1990 Female, age 91, right hemisphere 34.5
1850 Male, age 80, both hemispheres 34.3
1933 Female, age 85, both hemispheres 33.8
2245 Female, age 91, both hemispheres 33.7
2250 Female, age 67, right hemisphere 31.8
2693 Female, age 94, both hemispheres 28.4
2532 Female, age 72, left hemisphere 27.8
2692 Male, age 74, both hemispheres 25.2
2622 Female, age 67, right hemisphere 24.8
2018 Male, age 76, both hemispheres 23.9
Perirhinal gyrus
nTPM: 36.5
1847 Female, age 91, left hemisphere 41.8
1794 Male, age 80, right hemisphere 39.1
1841 Female, age 85, right hemisphere 38.0
2521 Female, age 94, right hemisphere 38.0
2848 Male, age 76, right hemisphere 25.5
Subiculum
nTPM: 27.6
1977 Female, age 85, both hemispheres 31.4
1901 Male, age 80, both hemispheres 29.7
2729 Female, age 91, right hemisphere 29.0
2619 Male, age 74, both hemispheres 27.1
2438 Female, age 94, left hemisphere 26.5
2042 Male, age 76, both hemispheres 21.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.2
Samples: 197

Max nTPM: 78.6
Min nTPM: 8.9
Std nTPM: 12.4
Median nTPM: 29.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 78.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 66.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 61.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 56.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 56.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 55.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 50.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 49.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 49.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 48.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 48.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.3
FF:10169-103B7 60 years, female 48.8
FF:10153-102I9 76 years, female 25.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.4
Pig sample Sample description nTPM
Subiculum
nTPM: 27.5
Samples: 4

Max nTPM: 35.9
Min nTPM: 23.8
Sample A Female 35.9
Sample B Female 23.8
Sample C Male 25.1
Sample D Male 25.0
Dorsal hippocampus
nTPM: 30.3
Samples: 4

Max nTPM: 36.0
Min nTPM: 27.4
Sample A Female 36.0
Sample B Female 29.9
Sample C Male 27.9
Sample D Male 27.4
Entorhinal cortex
nTPM: 31.4
Samples: 4

Max nTPM: 35.9
Min nTPM: 23.8
Sample A Female 35.8
Sample B Female 35.9
Sample C Male 29.9
Sample D Male 23.8
Ventral hippocampus
nTPM: 27.5
Samples: 4

Max nTPM: 30.9
Min nTPM: 23.1
Sample A Female 30.9
Sample B Female 23.1
Sample C Male 26.6
Sample D Male 29.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 49.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 47.6
Samples: 4

Max nTPM: 49.6
Min nTPM: 45.9
Sample A Male 47.8
Sample B Male 49.6
Sample C Female 45.9
Sample D Female 47.0
Hippocampal formation
nTPM: 49.0
Samples: 4

Max nTPM: 51.6
Min nTPM: 45.2
Sample A Male 45.2
Sample B Male 48.5
Sample C Female 50.8
Sample D Female 51.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.2
70474893 Antisense, RP_050623_01_C09, Mouse strain C57BL/6J (56 days, male) 3.6
74988572 Antisense, RP_060315_05_F02, Mouse strain C57BL/6J (56 days, male) 2.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org