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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
88.1
nTPM
Monaco:
31.7
nTPM
Schmiedel:
15.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
88.1
HPA sample
nTPM
gdT-cell nTPM: 85.2
Samples: 6
Max nTPM: 139.0
Min nTPM: 61.4
P10809_1007
68.6
P10809_1022
91.5
P10809_1041
139.0
P10809_1060
61.4
P10809_1077
63.0
P10809_1098
87.9
MAIT T-cell nTPM: 53.1
Samples: 6
Max nTPM: 66.6
Min nTPM: 39.6
P10809_1006
39.6
P10809_1024
66.6
P10809_1043
63.6
P10809_1062
45.2
P10809_1083
51.9
P10809_1097
51.9
Memory CD4 T-cell nTPM: 52.0
Samples: 6
Max nTPM: 64.0
Min nTPM: 32.4
P10809_1014
32.4
P10809_1026
47.6
P10809_1045
57.0
P10809_1064
64.0
P10809_1086
56.6
P10809_1113
54.6
Memory CD8 T-cell nTPM: 63.5
Samples: 5
Max nTPM: 82.2
Min nTPM: 49.2
P10809_1012
49.2
P10809_1027
57.7
P10809_1046
82.2
P10809_1065
75.8
P10809_1111
52.4
Naive CD4 T-cell nTPM: 32.3
Samples: 6
Max nTPM: 59.4
Min nTPM: 16.5
P10809_1015
16.9
P10809_1030
38.4
P10809_1049
59.4
P10809_1068
16.5
P10809_1085
32.1
P10809_1112
30.3
Naive CD8 T-cell nTPM: 47.8
Samples: 6
Max nTPM: 65.7
Min nTPM: 18.2
P10809_1016
18.2
P10809_1031
42.4
P10809_1050
55.9
P10809_1069
64.8
P10809_1087
65.7
P10809_1110
40.0
T-reg nTPM: 88.1
Samples: 6
Max nTPM: 125.1
Min nTPM: 63.9
P10809_1018
63.9
P10809_1037
85.5
P10809_1056
125.1
P10809_1075
80.0
P10809_1094
80.7
P10809_1106
93.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
31.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 14.5
Samples: 4
Max nTPM: 27.7
Min nTPM: 7.8
RHH5202_R3573
13.1
RHH5230_R3602
7.8
RHH5259_R3631
9.3
RHH5288_R3660
27.7
Effector memory CD8 T-cell nTPM: 18.0
Samples: 4
Max nTPM: 22.7
Min nTPM: 14.9
RHH5203_R3574
22.7
RHH5231_R3603
16.1
RHH5260_R3632
18.1
RHH5289_R3661
14.9
MAIT T-cell nTPM: 15.0
Samples: 4
Max nTPM: 19.3
Min nTPM: 10.6
RHH5233_R3605
16.7
RHH5205_R3576
10.6
RHH5262_R3634
13.4
RHH5297_R3663
19.3
Memory CD4 T-cell TFH nTPM: 21.2
Samples: 4
Max nTPM: 36.3
Min nTPM: 11.7
RHH5300_R3666
16.8
RHH5236_R3608
36.3
RHH5265_R3637
11.7
RHH5208_R3579
19.8
Memory CD4 T-cell Th1 nTPM: 22.7
Samples: 4
Max nTPM: 43.9
Min nTPM: 8.7
RHH5210_R3581
16.4
RHH5302_R3668
43.9
RHH5238_R3610
21.7
RHH5267_R3639
8.7
Memory CD4 T-cell Th1/Th17 nTPM: 15.7
Samples: 4
Max nTPM: 27.8
Min nTPM: 9.6
RHH5303_R3669
27.8
RHH5211_R3582
14.5
RHH5239_R3611
9.6
RHH5268_R3640
10.9
Memory CD4 T-cell Th17 nTPM: 13.9
Samples: 4
Max nTPM: 26.4
Min nTPM: 6.9
RHH5304_R3670
12.9
RHH5212_R3583
26.4
RHH5240_R3612
9.2
RHH5269_R3641
6.9
Memory CD4 T-cell Th2 nTPM: 15.2
Samples: 4
Max nTPM: 18.5
Min nTPM: 10.8
RHH5305_R3671
16.4
RHH5213_R3584
18.5
RHH5241_R3613
14.9
RHH5270_R3642
10.8
Naive CD4 T-cell nTPM: 8.9
Samples: 4
Max nTPM: 16.5
Min nTPM: 4.3
RHH5306_R3672
9.0
RHH5214_R3585
16.5
RHH5242_R3614
4.3
RHH5271_R3643
5.6
Naive CD8 T-cell nTPM: 6.8
Samples: 4
Max nTPM: 11.2
Min nTPM: 0.0
RHH5201_R3572
5.7
RHH5229_R3601
0.0
RHH5258_R3630
11.2
RHH5287_R3659
10.2
Non-Vd2 gdTCR nTPM: 29.0
Samples: 4
Max nTPM: 63.4
Min nTPM: 14.4
RHH5235_R3607
14.4
RHH5264_R3636
19.9
RHH5207_R3578
18.2
RHH5299_R3665
63.4
T-reg nTPM: 20.1
Samples: 4
Max nTPM: 37.4
Min nTPM: 11.7
RHH5301_R3667
37.4
RHH5237_R3609
19.2
RHH5266_R3638
12.2
RHH5209_R3580
11.7
Terminal effector memory CD4 T-cell nTPM: 16.4
Samples: 2
Max nTPM: 17.8
Min nTPM: 14.9
RHH5243_R3615
14.9
RHH5272_R3644
17.8
Terminal effector memory CD8 T-cell nTPM: 31.7
Samples: 4
Max nTPM: 50.3
Min nTPM: 8.6
RHH5232_R3604
8.6
RHH5204_R3575
50.3
RHH5261_R3633
27.6
RHH5296_R3662
40.2
Vd2 gdTCR nTPM: 29.1
Samples: 4
Max nTPM: 52.9
Min nTPM: 11.5
RHH5234_R3606
12.7
RHH5206_R3577
39.4
RHH5263_R3635
11.5
RHH5298_R3664
52.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
