HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:18.6 nTPM
HPA Brain:7.4 nTPM
GTEx:18.6 nTPM
FANTOM5:71.7 Scaled Tags Per Million
Pig:38.3 nTPM
Mouse:57.2 nTPM
Allen mouse:3.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018990Antibody HPA018993Antibody HPA018996Antibody HPA024089
Glial cells LowMediumNot detectedLow
Neuronal cells LowLowNot detectedMedium









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 7.4
Sample id Sample description nTPM
Hippocampus
nTPM: 7.4
1898 Male, age 80, left hemisphere 10.0
1855 Male, age 76, left hemisphere 8.9
2148 Female, age 91, left hemisphere 7.3
2529 Female, age 94, left hemisphere 7.1
1911 Female, age 85, right hemisphere 7.0
2621 Female, age 67, right hemisphere 3.9
Dentate gyrus
nTPM: 6.0
2010 Male, age 76, both hemispheres 8.1
1927 Female, age 91, both hemispheres 7.4
2246 Female, age 85, both hemispheres 5.5
2531 Female, age 67, both hemispheres 5.1
2530 Female, age 94, left hemisphere 5.0
2528 Male, age 74, both hemispheres 4.6
Entorhinal gyrus
nTPM: 6.6
1938 Female, age 85, left hemisphere 8.3
2117 Female, age 91, right hemisphere 7.4
2764 Male, age 80, right hemisphere 6.3
1787 Male, age 76, left hemisphere 6.0
2613 Female, age 94, left hemisphere 5.8
2686 Male, age 75, right hemisphere 5.6
Hippocampus, CA1
nTPM: 7.3
1873 Female, age 85, both hemispheres 9.0
2749 Male, age 80, left hemisphere 8.8
2045 Male, age 76, both hemispheres 7.6
2082 Female, age 91, right hemisphere 5.9
2527 Male, age 74, both hemispheres 5.2
Hippocampus, CA2
nTPM: 6.6
1892 Male, age 76, both hemispheres 8.3
2249 Male, age 74, both hemispheres 7.8
2113 Female, age 91, right hemisphere 6.7
1940 Female, age 85, left hemisphere 5.9
1963 Male, age 80, left hemisphere 5.4
2437 Female, age 94, left hemisphere 5.3
Hippocampus, CA3
nTPM: 7.1
1867 Male, age 76, both hemispheres 9.9
1891 Female, age 85, both hemispheres 8.8
2436 Male, age 74, both hemispheres 7.6
2137 Male, age 80, left hemisphere 5.5
2620 Female, age 94, left hemisphere 5.5
2861 Female, age 67, both hemispheres 5.5
Parahippocampal cortex
nTPM: 5.9
1933 Female, age 85, both hemispheres 7.0
1850 Male, age 80, both hemispheres 6.7
2245 Female, age 91, both hemispheres 6.6
2018 Male, age 76, both hemispheres 6.5
2622 Female, age 67, right hemisphere 6.1
2693 Female, age 94, both hemispheres 6.0
1990 Female, age 91, right hemisphere 5.6
2692 Male, age 74, both hemispheres 5.2
2250 Female, age 67, right hemisphere 5.0
2532 Female, age 72, left hemisphere 4.7
Perirhinal gyrus
nTPM: 6.6
1841 Female, age 85, right hemisphere 9.7
1847 Female, age 91, left hemisphere 7.5
1794 Male, age 80, right hemisphere 6.8
2521 Female, age 94, right hemisphere 4.9
2848 Male, age 76, right hemisphere 4.0
Subiculum
nTPM: 6.5
2042 Male, age 76, both hemispheres 8.3
2729 Female, age 91, right hemisphere 7.5
2619 Male, age 74, both hemispheres 7.1
1901 Male, age 80, both hemispheres 5.8
1977 Female, age 85, both hemispheres 5.7
2438 Female, age 94, left hemisphere 4.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.6
Samples: 197

Max nTPM: 69.0
Min nTPM: 3.5
Std nTPM: 8.5
Median nTPM: 17.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 69.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 47.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 39.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 39.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 38.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 36.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 36.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 36.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 34.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 34.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 34.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 71.7
FF:10169-103B7 60 years, female 87.2
FF:10153-102I9 76 years, female 56.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.3
Pig sample Sample description nTPM
Subiculum
nTPM: 35.6
Samples: 4

Max nTPM: 39.3
Min nTPM: 31.8
Sample A Female 39.3
Sample B Female 35.8
Sample C Male 35.3
Sample D Male 31.8
Dorsal hippocampus
nTPM: 38.3
Samples: 4

Max nTPM: 45.9
Min nTPM: 29.7
Sample A Female 45.9
Sample B Female 34.5
Sample C Male 43.1
Sample D Male 29.7
Entorhinal cortex
nTPM: 38.1
Samples: 4

Max nTPM: 50.3
Min nTPM: 29.0
Sample A Female 33.5
Sample B Female 50.3
Sample C Male 39.7
Sample D Male 29.0
Ventral hippocampus
nTPM: 34.3
Samples: 4

Max nTPM: 38.2
Min nTPM: 30.9
Sample A Female 38.2
Sample B Female 33.3
Sample C Male 34.8
Sample D Male 30.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 57.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.2
Samples: 4

Max nTPM: 54.6
Min nTPM: 44.8
Sample A Male 51.1
Sample B Male 50.2
Sample C Female 54.6
Sample D Female 44.8
Hippocampal formation
nTPM: 57.2
Samples: 4

Max nTPM: 62.1
Min nTPM: 51.6
Sample A Male 58.3
Sample B Male 51.6
Sample C Female 56.7
Sample D Female 62.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.5
74581380 Antisense, RP_051214_01_C05, Mouse strain C57BL/6J (56 days, male) 4.9
100144131 Antisense, RP_110421_01_B10, Mouse strain C57BL/6J (56 days, male) 2.0

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