MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:283.3 nTPM
HPA Brain:268.0 nTPM
GTEx:283.3 nTPM
FANTOM5:224.7 Scaled Tags Per Million
Pig:310.8 nTPM
Mouse:482.3 nTPM
Allen mouse:21.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 268.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 217.2
2586 Male, age 75, left hemisphere 275.8
2666 Male, age 74, left hemisphere 244.8
1827 Male, age 72, unknown 232.0
2828 Female, age 72, unknown 227.3
2411 Female, age 72, unknown 227.0
1870 Female, age 42, unknown 218.3
2019 Male, age 18, unknown 199.9
1833 Male, age 53, unknown 196.9
1830 Male, age 51, unknown 181.6
2219 Male, age 76, both hemispheres 168.2
Dorsal raphe nucleus
nTPM: 268.0
2298 Female, age 72, unknown 323.0
2016 Female, age 72, unknown 272.9
2047 Male, age 72, unknown 269.3
1828 Male, age 53, unknown 265.6
2750 Male, age 76, both hemispheres 209.4
Inferior colliculus
nTPM: 241.2
2097 Female, age 72, unknown 272.7
1890 Male, age 53, unknown 242.3
1848 Female, age 42, unknown 235.3
2849 Male, age 72, unknown 214.4
Median raphe nucleus
nTPM: 232.8
2220 Male, age 76, midline 232.8
Periaquaductal grey, anterior
nTPM: 240.4
1947 Male, age 18, unknown 255.8
1795 Male, age 51, unknown 247.6
2502 Female, age 75, unknown 217.8
Periaquaductal grey, dorsal
nTPM: 259.5
2850 Male, age 76, both hemispheres 298.3
1840 Male, age 53, unknown 274.9
1831 Male, age 72, unknown 236.6
2464 Female, age 72, unknown 228.2
Periaquaductal grey, lateral
nTPM: 245.6
2140 Male, age 76, both hemispheres 261.2
2053 Male, age 18, unknown 247.4
2272 Male, age 74, both hemispheres 228.2
Pretectal area
nTPM: 237.0
1817 Female, age 42, unknown 271.6
2224 Female, age 72, unknown 265.2
2273 Male, age 74, both hemispheres 257.1
1816 Male, age 51, unknown 252.6
2667 Female, age 75, unknown 252.2
1815 Male, age 53, unknown 240.1
1944 Female, age 72, unknown 235.7
2007 Male, age 72, unknown 232.0
2825 Male, age 18, unknown 226.5
2316 Male, age 76, right hemisphere 190.7
2407 Male, age 75, both hemispheres 183.0
Red nucleus
nTPM: 219.5
1821 Female, age 72, unknown 273.1
2725 Female, age 75, unknown 244.4
1954 Female, age 42, unknown 242.8
2503 Female, age 72, unknown 242.3
1904 Male, age 53, unknown 226.1
2227 Male, age 72, unknown 216.8
2769 Male, age 72, unknown 215.3
2823 Male, age 76, right hemisphere 215.3
1865 Male, age 51, unknown 212.4
2785 Male, age 18, unknown 195.2
2588 Male, age 74, left hemisphere 190.8
2584 Male, age 75, left hemisphere 159.7
Substantia nigra
nTPM: 237.5
1916 Female, age 42, unknown 273.8
1851 Male, age 51, unknown 261.8
2699 Male, age 18, unknown 258.0
2241 Male, age 72, unknown 254.3
1889 Female, age 72, unknown 242.6
2583 Male, age 75, right hemisphere 230.0
1941 Male, age 53, unknown 220.6
2409 Female, age 72, unknown 216.5
2665 Male, age 74, both hemispheres 209.3
2590 Female, age 75, unknown 207.6
Superior colliculus
nTPM: 222.3
2087 Female, age 72, unknown 241.4
1995 Male, age 72, unknown 236.8
1796 Male, age 53, unknown 235.2
2261 Male, age 18, unknown 235.2
2668 Female, age 75, unknown 230.9
2664 Male, age 75, both hemispheres 225.0
2587 Male, age 74, left hemisphere 217.2
1839 Male, age 51, unknown 208.5
1913 Female, age 42, unknown 205.2
1895 Male, age 76, right hemisphere 187.4
Ventral tegmental area
nTPM: 240.1
2410 Female, age 72, unknown 263.6
1942 Male, age 51, unknown 251.8
1915 Female, age 42, unknown 241.6
2218 Male, age 76, both hemispheres 233.5
2021 Male, age 53, unknown 231.9
2223 Female, age 72, unknown 217.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 283.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 283.3
Samples: 139

Max nTPM: 598.8
Min nTPM: 122.1
Std nTPM: 87.6
Median nTPM: 270.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 598.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 576.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 570.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 541.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 536.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 486.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 467.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 426.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 423.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 417.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 410.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 224.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 224.7
FF:10158-103A5 76 years, female 224.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 310.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 263.7
Samples: 4

Max nTPM: 342.5
Min nTPM: 192.0
Sample A Female 342.5
Sample B Female 243.1
Sample C Male 277.2
Sample D Male 192.0
Midbrain
nTPM: 287.5
Samples: 4

Max nTPM: 366.2
Min nTPM: 238.9
Sample A Female 277.3
Sample B Female 238.9
Sample C Male 366.2
Sample D Male 267.7
Periaqueductal gray
nTPM: 229.3
Samples: 3

Max nTPM: 259.0
Min nTPM: 203.2
Sample B Female 225.8
Sample C Male 259.0
Sample D Male 203.2
Superior colliculi
nTPM: 310.8
Samples: 4

Max nTPM: 358.0
Min nTPM: 265.8
Sample A Female 317.3
Sample B Female 302.2
Sample C Male 358.0
Sample D Male 265.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 482.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 482.3
Samples: 4

Max nTPM: 494.2
Min nTPM: 468.0
Sample A Male 490.4
Sample B Male 468.0
Sample C Female 476.6
Sample D Female 494.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.4
71489783 Antisense, RP_050512_04_E11, Mouse strain C57BL/6J (56 days, male) 21.4

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