MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA Brain:47.6 nTPM
GTEx:9.0 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:11.0 nTPM
Mouse:16.7 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.2
2219 Male, age 76, both hemispheres 23.9
2666 Male, age 74, left hemisphere 22.8
1827 Male, age 72, unknown 21.6
2411 Female, age 72, unknown 20.2
2828 Female, age 72, unknown 18.7
1870 Female, age 42, unknown 15.9
2586 Male, age 75, left hemisphere 15.3
1833 Male, age 53, unknown 13.7
1830 Male, age 51, unknown 12.5
2019 Male, age 18, unknown 7.7
Dorsal raphe nucleus
nTPM: 26.8
2298 Female, age 72, unknown 36.4
2047 Male, age 72, unknown 34.5
2750 Male, age 76, both hemispheres 30.4
1828 Male, age 53, unknown 16.6
2016 Female, age 72, unknown 15.8
Inferior colliculus
nTPM: 14.1
2097 Female, age 72, unknown 16.9
2849 Male, age 72, unknown 15.5
1890 Male, age 53, unknown 12.1
1848 Female, age 42, unknown 11.9
Median raphe nucleus
nTPM: 47.6
2220 Male, age 76, midline 47.6
Periaquaductal grey, anterior
nTPM: 24.5
1795 Male, age 51, unknown 26.2
2502 Female, age 75, unknown 25.0
1947 Male, age 18, unknown 22.5
Periaquaductal grey, dorsal
nTPM: 22.3
1840 Male, age 53, unknown 27.7
2850 Male, age 76, both hemispheres 21.9
1831 Male, age 72, unknown 20.1
2464 Female, age 72, unknown 19.6
Periaquaductal grey, lateral
nTPM: 21.2
2053 Male, age 18, unknown 22.0
2272 Male, age 74, both hemispheres 20.9
2140 Male, age 76, both hemispheres 20.7
Pretectal area
nTPM: 20.3
2224 Female, age 72, unknown 33.8
2825 Male, age 18, unknown 28.0
1816 Male, age 51, unknown 26.0
1944 Female, age 72, unknown 21.0
2667 Female, age 75, unknown 19.6
1815 Male, age 53, unknown 17.3
2316 Male, age 76, right hemisphere 17.2
2273 Male, age 74, both hemispheres 16.7
2407 Male, age 75, both hemispheres 14.9
2007 Male, age 72, unknown 14.6
1817 Female, age 42, unknown 14.4
Red nucleus
nTPM: 9.4
2584 Male, age 75, left hemisphere 17.3
2588 Male, age 74, left hemisphere 12.1
2725 Female, age 75, unknown 9.8
2769 Male, age 72, unknown 9.3
2785 Male, age 18, unknown 9.3
2227 Male, age 72, unknown 8.8
2503 Female, age 72, unknown 8.5
1821 Female, age 72, unknown 8.2
1904 Male, age 53, unknown 8.2
1954 Female, age 42, unknown 7.6
2823 Male, age 76, right hemisphere 7.2
1865 Male, age 51, unknown 7.1
Substantia nigra
nTPM: 17.0
1916 Female, age 42, unknown 22.4
2241 Male, age 72, unknown 22.3
1941 Male, age 53, unknown 19.9
2699 Male, age 18, unknown 17.1
1851 Male, age 51, unknown 17.0
2665 Male, age 74, both hemispheres 16.4
1889 Female, age 72, unknown 15.8
2583 Male, age 75, right hemisphere 13.6
2590 Female, age 75, unknown 13.6
2409 Female, age 72, unknown 12.2
Superior colliculus
nTPM: 17.5
2261 Male, age 18, unknown 24.9
1796 Male, age 53, unknown 23.2
2087 Female, age 72, unknown 21.1
2668 Female, age 75, unknown 19.2
2664 Male, age 75, both hemispheres 18.0
1839 Male, age 51, unknown 16.8
2587 Male, age 74, left hemisphere 15.6
1913 Female, age 42, unknown 13.3
1895 Male, age 76, right hemisphere 13.2
1995 Male, age 72, unknown 9.4
Ventral tegmental area
nTPM: 21.8
2021 Male, age 53, unknown 27.2
2218 Male, age 76, both hemispheres 25.4
1942 Male, age 51, unknown 24.6
1915 Female, age 42, unknown 22.5
2223 Female, age 72, unknown 16.6
2410 Female, age 72, unknown 14.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.0
Samples: 139

Max nTPM: 21.6
Min nTPM: 2.3
Std nTPM: 4.1
Median nTPM: 8.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 19.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 19.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 19.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 18.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 18.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 17.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 17.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 16.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.6
Samples: 4

Max nTPM: 17.4
Min nTPM: 1.8
Sample A Female 14.5
Sample B Female 8.5
Sample C Male 17.4
Sample D Male 1.8
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 11.7
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 9.3
Sample C Male 8.0
Sample D Male 11.7
Periaqueductal gray
nTPM: 10.9
Samples: 3

Max nTPM: 16.3
Min nTPM: 7.5
Sample B Female 7.5
Sample C Male 16.3
Sample D Male 9.0
Superior colliculi
nTPM: 4.3
Samples: 4

Max nTPM: 6.6
Min nTPM: 2.5
Sample A Female 5.3
Sample B Female 2.5
Sample C Male 2.9
Sample D Male 6.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.7
Samples: 4

Max nTPM: 17.3
Min nTPM: 15.5
Sample A Male 17.3
Sample B Male 17.3
Sample C Female 15.5
Sample D Female 16.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71358616 Antisense, RP_050725_03_F03, Mouse strain C57BL/6J (56 days, male) 0.6
100146147 Antisense, RP_110421_02_E03, Mouse strain C57BL/6J (56 days, male) 0.3

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