MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA Brain:39.1 nTPM
GTEx:24.1 nTPM
FANTOM5:126.2 Scaled Tags Per Million
Pig:33.1 nTPM
Mouse:16.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.5
2828 Female, age 72, unknown 46.8
2586 Male, age 75, left hemisphere 41.1
2666 Male, age 74, left hemisphere 38.8
1830 Male, age 51, unknown 37.4
2019 Male, age 18, unknown 36.3
1833 Male, age 53, unknown 35.8
1870 Female, age 42, unknown 34.9
2411 Female, age 72, unknown 31.9
2219 Male, age 76, both hemispheres 31.4
1827 Male, age 72, unknown 30.2
Dorsal raphe nucleus
nTPM: 35.9
2016 Female, age 72, unknown 39.6
1828 Male, age 53, unknown 39.0
2047 Male, age 72, unknown 34.6
2750 Male, age 76, both hemispheres 33.4
2298 Female, age 72, unknown 33.0
Inferior colliculus
nTPM: 30.4
2849 Male, age 72, unknown 31.8
1890 Male, age 53, unknown 31.4
1848 Female, age 42, unknown 30.7
2097 Female, age 72, unknown 27.6
Median raphe nucleus
nTPM: 28.2
2220 Male, age 76, midline 28.2
Periaquaductal grey, anterior
nTPM: 28.7
1795 Male, age 51, unknown 32.3
2502 Female, age 75, unknown 27.5
1947 Male, age 18, unknown 26.1
Periaquaductal grey, dorsal
nTPM: 32.7
1831 Male, age 72, unknown 37.6
2850 Male, age 76, both hemispheres 36.4
1840 Male, age 53, unknown 28.9
2464 Female, age 72, unknown 27.8
Periaquaductal grey, lateral
nTPM: 33.0
2140 Male, age 76, both hemispheres 35.3
2053 Male, age 18, unknown 33.2
2272 Male, age 74, both hemispheres 30.5
Pretectal area
nTPM: 31.7
2407 Male, age 75, both hemispheres 39.3
1815 Male, age 53, unknown 35.6
2667 Female, age 75, unknown 34.0
2316 Male, age 76, right hemisphere 33.7
2273 Male, age 74, both hemispheres 32.8
2825 Male, age 18, unknown 32.5
1817 Female, age 42, unknown 32.0
1944 Female, age 72, unknown 27.9
2007 Male, age 72, unknown 27.9
2224 Female, age 72, unknown 27.8
1816 Male, age 51, unknown 25.4
Red nucleus
nTPM: 39.1
1865 Male, age 51, unknown 48.0
2769 Male, age 72, unknown 43.1
1821 Female, age 72, unknown 41.9
2823 Male, age 76, right hemisphere 41.1
2227 Male, age 72, unknown 40.9
2503 Female, age 72, unknown 39.6
1904 Male, age 53, unknown 39.5
1954 Female, age 42, unknown 38.9
2785 Male, age 18, unknown 38.2
2584 Male, age 75, left hemisphere 36.4
2725 Female, age 75, unknown 34.2
2588 Male, age 74, left hemisphere 27.3
Substantia nigra
nTPM: 39.1
2699 Male, age 18, unknown 50.4
2665 Male, age 74, both hemispheres 48.2
2409 Female, age 72, unknown 44.3
2590 Female, age 75, unknown 43.6
2583 Male, age 75, right hemisphere 41.9
1916 Female, age 42, unknown 37.8
1851 Male, age 51, unknown 35.0
1941 Male, age 53, unknown 33.8
2241 Male, age 72, unknown 28.4
1889 Female, age 72, unknown 27.8
Superior colliculus
nTPM: 34.4
1995 Male, age 72, unknown 45.2
1913 Female, age 42, unknown 40.7
2664 Male, age 75, both hemispheres 40.1
2587 Male, age 74, left hemisphere 36.2
2668 Female, age 75, unknown 32.6
2087 Female, age 72, unknown 32.1
1839 Male, age 51, unknown 30.9
1796 Male, age 53, unknown 30.2
1895 Male, age 76, right hemisphere 28.9
2261 Male, age 18, unknown 27.4
Ventral tegmental area
nTPM: 38.0
2021 Male, age 53, unknown 42.2
1942 Male, age 51, unknown 39.0
2223 Female, age 72, unknown 38.2
2410 Female, age 72, unknown 37.3
2218 Male, age 76, both hemispheres 36.7
1915 Female, age 42, unknown 34.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.1
Samples: 139

Max nTPM: 45.0
Min nTPM: 7.0
Std nTPM: 6.4
Median nTPM: 23.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 45.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 42.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 37.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 36.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 36.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 35.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 34.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 34.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 33.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 33.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 33.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.2
FF:10158-103A5 76 years, female 126.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.1
Samples: 4

Max nTPM: 34.9
Min nTPM: 29.8
Sample A Female 33.5
Sample B Female 34.9
Sample C Male 29.8
Sample D Male 34.2
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 50.3
Min nTPM: 18.1
Sample A Female 50.3
Sample B Female 27.9
Sample C Male 19.7
Sample D Male 18.1
Periaqueductal gray
nTPM: 26.5
Samples: 3

Max nTPM: 28.4
Min nTPM: 23.9
Sample B Female 28.4
Sample C Male 27.1
Sample D Male 23.9
Superior colliculi
nTPM: 29.7
Samples: 4

Max nTPM: 40.6
Min nTPM: 21.0
Sample A Female 33.4
Sample B Female 40.6
Sample C Male 21.0
Sample D Male 23.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 17.7
Min nTPM: 16.0
Sample A Male 17.1
Sample B Male 16.0
Sample C Female 17.7
Sample D Female 16.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69015805 Antisense, RP_050315_01_G03, Mouse strain C57BL/6J (56 days, male) 0.7

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