MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.3 nTPM
HPA Brain:23.8 nTPM
GTEx:9.3 nTPM
FANTOM5:61.5 Scaled Tags Per Million
Mouse:0.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.8
2666 Male, age 74, left hemisphere 19.0
1830 Male, age 51, unknown 17.8
1833 Male, age 53, unknown 16.5
2828 Female, age 72, unknown 14.8
1870 Female, age 42, unknown 14.5
2411 Female, age 72, unknown 13.6
2019 Male, age 18, unknown 13.1
1827 Male, age 72, unknown 10.2
2586 Male, age 75, left hemisphere 9.1
2219 Male, age 76, both hemispheres 9.0
Dorsal raphe nucleus
nTPM: 14.8
2016 Female, age 72, unknown 17.7
1828 Male, age 53, unknown 16.3
2750 Male, age 76, both hemispheres 13.8
2047 Male, age 72, unknown 13.2
2298 Female, age 72, unknown 13.2
Inferior colliculus
nTPM: 11.3
1890 Male, age 53, unknown 11.9
2097 Female, age 72, unknown 11.2
2849 Male, age 72, unknown 11.1
1848 Female, age 42, unknown 11.0
Median raphe nucleus
nTPM: 13.8
2220 Male, age 76, midline 13.8
Periaquaductal grey, anterior
nTPM: 10.4
1795 Male, age 51, unknown 13.2
1947 Male, age 18, unknown 11.3
2502 Female, age 75, unknown 6.6
Periaquaductal grey, dorsal
nTPM: 13.2
1831 Male, age 72, unknown 17.9
2464 Female, age 72, unknown 12.3
2850 Male, age 76, both hemispheres 12.3
1840 Male, age 53, unknown 10.4
Periaquaductal grey, lateral
nTPM: 17.3
2272 Male, age 74, both hemispheres 21.5
2140 Male, age 76, both hemispheres 15.8
2053 Male, age 18, unknown 14.7
Pretectal area
nTPM: 12.3
2407 Male, age 75, both hemispheres 20.4
2273 Male, age 74, both hemispheres 16.3
2224 Female, age 72, unknown 13.4
2316 Male, age 76, right hemisphere 13.4
2825 Male, age 18, unknown 12.5
1944 Female, age 72, unknown 11.2
2007 Male, age 72, unknown 11.1
1815 Male, age 53, unknown 11.0
1817 Female, age 42, unknown 11.0
2667 Female, age 75, unknown 7.6
1816 Male, age 51, unknown 6.9
Red nucleus
nTPM: 15.2
1865 Male, age 51, unknown 18.7
2725 Female, age 75, unknown 18.3
2823 Male, age 76, right hemisphere 17.5
2769 Male, age 72, unknown 16.5
1904 Male, age 53, unknown 16.3
2227 Male, age 72, unknown 15.8
2503 Female, age 72, unknown 15.3
2584 Male, age 75, left hemisphere 15.3
2785 Male, age 18, unknown 14.3
1954 Female, age 42, unknown 13.7
1821 Female, age 72, unknown 11.6
2588 Male, age 74, left hemisphere 8.7
Substantia nigra
nTPM: 23.8
2590 Female, age 75, unknown 51.5
2583 Male, age 75, right hemisphere 31.6
2699 Male, age 18, unknown 29.6
2665 Male, age 74, both hemispheres 24.5
2409 Female, age 72, unknown 24.1
1851 Male, age 51, unknown 19.1
1916 Female, age 42, unknown 16.9
1941 Male, age 53, unknown 15.4
2241 Male, age 72, unknown 14.8
1889 Female, age 72, unknown 10.3
Superior colliculus
nTPM: 14.6
1913 Female, age 42, unknown 23.1
2587 Male, age 74, left hemisphere 20.6
1995 Male, age 72, unknown 19.6
2664 Male, age 75, both hemispheres 16.7
2087 Female, age 72, unknown 13.7
1839 Male, age 51, unknown 11.7
1796 Male, age 53, unknown 11.6
2261 Male, age 18, unknown 10.4
2668 Female, age 75, unknown 10.3
1895 Male, age 76, right hemisphere 7.7
Ventral tegmental area
nTPM: 18.1
2021 Male, age 53, unknown 24.9
1942 Male, age 51, unknown 18.0
2223 Female, age 72, unknown 17.3
1915 Female, age 42, unknown 16.7
2410 Female, age 72, unknown 16.2
2218 Male, age 76, both hemispheres 15.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.3
Samples: 139

Max nTPM: 40.3
Min nTPM: 0.6
Std nTPM: 7.1
Median nTPM: 6.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 40.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 33.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 32.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 30.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 27.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 25.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 24.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 23.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 23.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 22.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.5
FF:10158-103A5 76 years, female 61.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.1
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69028324 Antisense, RP_050316_01_B01, Mouse strain C57BL/6J (56 days, male) 0.3

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